BtaEX0014449 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048155 | FCN2
Description
Bos taurus ficolin (collagen/fibrinogen domain containing) 1 (FCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001010996]
Coordinates
chr11:106822997-106826894:+
Coord C1 exon
chr11:106822997-106823128
Coord A exon
chr11:106824398-106824511
Coord C2 exon
chr11:106826832-106826894
Length
114 bp
Sequences
Splice sites
3' ss Seq
AACTCCGCGTTTCTCTGCAGAGG
3' ss Score
8.12
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
Exon sequences
Seq C1 exon
CGCAAGAGCTCGGGCACAGACCACAGGACATGGAGCTGGGAGGCGCGGCCGGGGCCCTGGGGCCCAGTGGCCCGCTCCTCGTGTGCCTGTGCTTCGGGACCCTCGCTGCCCAGGCTGCAGACACATGTCCAG
Seq A exon
AGGTGAAGCTGGTGGGTCTGGAGGGCTCCGACAAGCTGTCCATCCTCCGAGGCTGCCCAGGGCTGCCCGGAGCCCCAGGGCTCAAGGGAGAGACGGGTGCCGCTGGACTGAAGG
Seq C2 exon
GAGAACGAGGTTTGCCCGGAGTCCCTGGGAAGGCAGGGCCGGCTGGACCCAAAGGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048155_MULTIEX1-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.333 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(39.7=59.0)
C2:
PF0139113=Collagen=FE(36.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCTCGGGCACAG
R:
CTGTGCTTCCTTTGGGTCCAG
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development