GgaEX0013424 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:276902-278512:+
Coord C1 exon
chr17:276902-277004
Coord A exon
chr17:277812-277925
Coord C2 exon
chr17:278459-278512
Length
114 bp
Sequences
Splice sites
3' ss Seq
GATTGTCTTCATTTACTCAGAGG
3' ss Score
4.77
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
AGAGAGTGGAGCACCGTGCTGGCGATGGGGAGGGCAGCTCCCATCCTCCTCGCCCTGCTCAGTGCATCAGCCACCACCTGTAGCACCCAGGACACCTGTCCAG
Seq A exon
AGGTGAAAATAGTGGGACTTGGTGAGGCAGACCGTCTTGCTGTTCTTCAAGGATGCCCAGGGATCCCAGGTGCAGCTGGCCCAAAGGGAGAACCAGGCCTCTCAGGAAAAAAAG
Seq C2 exon
GAGAAATGGGAACCAAGGGACCCCCTGGGAAAGCAGGACCACCCGGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.462 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(36.1=56.4)
C2:
PF0139113=Collagen=FE(29.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTGGAGCACCGTGC
R:
TTTTATTCCGGGTGGTCCTGC
Band lengths:
156-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]