MmuEX6099960 @ mm10
Exon Skipping
Gene
ENSMUSG00000026835 | Fcnb
Description
ficolin B [Source:MGI Symbol;Acc:MGI:1341158]
Coordinates
chr2:28080896-28084885:-
Coord C1 exon
chr2:28084791-28084885
Coord A exon
chr2:28082906-28083019
Coord C2 exon
chr2:28080896-28080949
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGTGTTGTTCTGCAGAAC
3' ss Score
9.66
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
AGAGGGGGTTGGGAGCCGACCAGTTGCCATGGCCCTGGGATCTGCTGCACTATTCGTCTTGACCCTGACTGTCCATGCGGCTGGCACATGCCCAG
Seq A exon
AACTGAAGGTCCTAGATCTGGAAGGCTACAAGCAGCTCACCATCCTTCAAGGTTGCCCTGGCTTGCCTGGAGCTGCAGGGCCCAAGGGAGAGGCAGGTGCCAAAGGAGATAGAG
Seq C2 exon
GAGAGAGTGGCCTTCCTGGAATTCCTGGAAAAGAAGGACCAACTGGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026835-'1-3,'1-1,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.385 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(36.1=56.4)
C2:
PF0139113=Collagen=FE(29.5=100)
Main Skipping Isoform:
ENSMUST00000028179fB10033
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGAGCCGACCAGTTG
R:
TGGGTCCAGTTGGTCCTTCTT
Band lengths:
139-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types