GgaEX0013424 @ galGal3
Exon Skipping
Gene
ENSGALG00000009151 | FCN3
Description
NA
Coordinates
chr17:656051-657661:+
Coord C1 exon
chr17:656051-656153
Coord A exon
chr17:656961-657074
Coord C2 exon
chr17:657608-657661
Length
114 bp
Sequences
Splice sites
3' ss Seq
GATTGTCTTCATTTACTCAGAGG
3' ss Score
4.77
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
AGAGAGTGGAGCACCGTGCTGGCGATGGGGAGGGCAGCTCCCATCCTCCTCGCCCTGCTCAGTGCATCAGCCACCACCTGTAGCACCCAGGACACCTGTCCAG
Seq A exon
AGGTGAAAATAGTGGGACTTGGTGAGGCAGACCGTCTTGCTGTTCTTCAAGGATGCCCAGGGATCCCAGGTGCAGCTGGCCCAAAGGGAGAACCAGGCCTCTCAGGAAAAAAAG
Seq C2 exon
GAGAAATGGGAACCAAGGGACCCCCTGGGAAAGCAGGACCACCCGGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.359 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(39.0=59.0)
C2:
PF0139113=Collagen=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTGGAGCACCGTGC
R:
TTTTATTCCGGGTGGTCCTGC
Band lengths:
156-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]