HsaEX0025460 @ hg19
Exon Skipping
Gene
ENSG00000160339 | FCN2
Description
ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin) [Source:HGNC Symbol;Acc:3624]
Coordinates
chr9:137772658-137775201:+
Coord C1 exon
chr9:137772658-137772767
Coord A exon
chr9:137774372-137774485
Coord C2 exon
chr9:137775148-137775201
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCACCTGTGTTTTTCTGCAGAGG
3' ss Score
10.48
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACCAGAAGAGATGGAGCTGGACAGAGCTGTGGGGGTCCTGGGCGCTGCCACCCTGCTGCTCTCTTTCCTGGGCATGGCCTGGGCTCTCCAGGCGGCAGACACCTGTCCAG
Seq A exon
AGGTGAAGATGGTGGGCCTGGAGGGCTCTGACAAGCTCACCATTCTCCGAGGCTGTCCGGGGCTGCCTGGGGCCCCTGGGCCCAAGGGAGAGGCAGGCACCAATGGAAAGAGAG
Seq C2 exon
GAGAACGTGGCCCCCCTGGACCTCCTGGGAAGGCAGGACCACCTGGGCCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160339_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.590 C2=0.935
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(55.0=84.6)
C2:
PF0139113=Collagen=FE(30.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGAGCTGGACAGAGC
R:
AGGTGGTCCTGCCTTCCC
Band lengths:
148-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)