RnoEX0035596 @ rn6
Exon Skipping
Gene
ENSRNOG00000009342 | Fcnb
Description
ficolin B [Source:RGD Symbol;Acc:621222]
Coordinates
chr3:6622127-6626284:-
Coord C1 exon
chr3:6626086-6626284
Coord A exon
chr3:6624208-6624321
Coord C2 exon
chr3:6622127-6622180
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGTGCTGTTCTGCAGAGG
3' ss Score
7.81
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CCAGGAAGTGACTGTCTCCTGGGGATTGGAGCCCAAGATGGGGATCTAGGGTTCCTGCCTTATAAGAGCAGGGTACCCCTGCAAAGCTATTGAGGGGCTGCGAGCTGAGCAGTTGCCATGGTCCTGGGATCTGCTGCACTATTCGTCTTGAGCCTGTGTGTCACTGAGCTGACCCTCCATGCTGCTGACACCTGCCCAG
Seq A exon
AGGTGAAGGTCCTGGATCTGGAGGGCTCCAACAAACTCACCATCCTTCAAGGCTGCCCTGGCTTGCCTGGAGCCCTGGGGCCCAAGGGAGAGGCTGGTGCCAAAGGAGATAGAG
Seq C2 exon
GAGAGAGTGGCCTTCCTGGACACCCTGGAAAGGCGGGGCCAACTGGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009342-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(37.7=59.0)
C2:
PF0139113=Collagen=FE(29.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCTCCTGGGGATTGGA
R:
CTTTGGGTCCAGTTGGCCC
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]