BtaEX0014625 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34977901-34978619:-
Coord C1 exon
chr18:34978429-34978619
Coord A exon
chr18:34978145-34978337
Coord C2 exon
chr18:34977901-34978063
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTCCACCCACCTAGGTT
3' ss Score
8.19
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGGACTTTGAGCAGCTGACTGAGAACCTGGGGCAGCTGGAGCGCCGGAGCCGGGCAGCTGAAGACAGCCTGCGGAGCCTGACCAAGCATGATCTGGCTCCAGCCCTGCGTGCCCGCCTCACCCACTTCCTGGTGCACTGTACCCGCCGTGTTGCCATGCTGAGGGTCGTACACCGCCGTGTCTGCAACAG
Seq A exon
GTTCCATGCCTTCCTGCTGTACCTGGGGTACACGGCAGAGGCAGCCCGTGAGGTCCGCATCATGCAGTTTTGCCACACGCTGCGGGAGTTCGCACTGGAGTATCGGACCTGCCGGGACCGGGTGCTGCAGCAGCAACAGAAGCGGGCCACATACCGTGAGCGCAACAAGACTCGGGGACGTATGATCACTGAG
Seq C2 exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAAACCCCCAGCAAGCCATCTGTCCCTGTGGCTGTGAGCAGTGGGCCAGGAGAAGGTGATGCTGATAGTCACGCCACCATGAAGAGTCTGCTGGCCAGCAAGCCTGAGGATGCCACACATGGCCGTCGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-13/15=12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.331 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.9=100)
A:
PF0218118=FH2=PD(9.4=53.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTGACCAAGCATGATC
R:
CTGGCCAGCAGACTCTTCATG
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development