RnoEX6060269 @ rn6
Exon Skipping
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37285587-37286316:-
Coord C1 exon
chr19:37286126-37286316
Coord A exon
chr19:37285834-37286026
Coord C2 exon
chr19:37285587-37285749
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTCCAACCTGCCTAGGTT
3' ss Score
8.23
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGACTTTGAGCAGCTGACTGAGAACCTAGGGCAGCTGGAGTGCCGGAGCCAGGCTGCTGAGGACAGCCTCCGGAGCTTGGCAAAGCATGAGCTATCCCCAGCTCTGCGTGCCCGCCTTACCCACTTCCTGGCCCAATGTACCCGCCGAGTAGCCATGCTAAGAGTAGTACACCGTCGAGTCTGCAACAG
Seq A exon
GTTCCACGCCTTCCTTCTCTACTTGGGCTACACCGCACAGGCAGCAAGGGAAGTACGCATCATGCAGTTCTGTCACACGCTCAGAGAGTTTGCACTTGAGTATCGGACTTGTCGGGAGCGGGTACTGCAGCAGCAGCAGAAACGGGCTACATACCGCGAACGCAACAAGACCCGGGGTCGCATGATTACTGAG
Seq C2 exon
ACAGAGAAGTTCTCGGGTGTGGCTGGGGAGGTCCCCAGTAACCTGTCTGTCCCAGTGGCTGTGGGCAGCGGGCCAGGTCGGGGTGATGCTGACAATCATGCCAGTATGAAGAGTTTGCTTACCAGCAGGCCAGAAGACGCCACACACAGCCGACGTAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625-'26-44,'26-43,27-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.836
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.9=100)
A:
PF0218118=FH2=PD(9.4=53.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGGCTGCTGAGGA
R:
ATGATTGTCAGCATCACCCCG
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]