DreEX0032774 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34338522-34340865:+
Coord C1 exon
chr7:34338522-34338712
Coord A exon
chr7:34338845-34339037
Coord C2 exon
chr7:34340697-34340865
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCCCACTTTGCAGGTT
3' ss Score
10.93
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
GTGGAGTTTGAGCAATTATCTGAAAACCTGATTCAGTTGGAAAGAAAATGCAAAACGTCCTGGGACAACCTTAAAGTTGTGGCCAAGCATGAAACTAAACCCAACTTAAAAAACAAAATGACTGAATTCCTGAAAGACTGTACTGAAAGAATCATCATCCTGAAAGTAGTGCACAGACGCATTATTAACAG
Seq A exon
GTTTCATTCTTTCCTGTTGTACTTGGGTCATCCTTCATACTCGGTGCGGGACACTAAAGTGACTCATTTCTGTAAGATCATCAGTGAGTTTGCCCTGGAGTATCGCACCACTCGTGAGAGAGTCCTCACTCAGAAACGCAAGCGTGCCGTCCACCGAGAGCGCACCAAAACCCGGGGCAAGCTAATCACTGAG
Seq C2 exon
ACAGAAAAGTTTTCTGGAGCAGTTACAGAGCTGTCTCTGGATAGCAGCCCATCCCCAGTGTTTTCAGCAGTAGAATCAGAGCCAGCCCAGGAAGAGCATGAAAACATGAAAAACCTGCTCATCGCCAACAACGACAACAAGCTGCTGCGCCGGAGCCGTGCTGTACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'24-27,'24-26,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.329 C2=0.554
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(17.1=100)
A:
PF0218118=FH2=PD(9.5=53.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAAAACGTCCTGGGACAA
R:
TTTCATGCTCTTCCTGGGCTG
Band lengths:
247-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]