MmuEX6037928 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107853747-107854477:-
Coord C1 exon
chr8:107854287-107854477
Coord A exon
chr8:107853995-107854187
Coord C2 exon
chr8:107853747-107853909
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTCCAACCTGCCTAGGTT
3' ss Score
8.23
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGACTTTGAACAGCTGACTGAGAACCTAGGGCAGCTGGAGTGCCGGAGCCAGGCTGCCGAGGACAGCCTCCGGAGCTTGGCTAAGCACGAGCTCTCCCCAGCTCTGCGTGCTCGCCTCACCCACTTCTTGGCCCAGTGTACCCGCCGGGTAGCCATGTTAAGAGTAGTGCATCGCCGAGTCTGCAATAG
Seq A exon
GTTCCATGCCTTCCTGCTCTACCTGGGCTACACCCCACAGGCAGCAAGGGATGTACGCATCATGCAGTTCTGCCACACACTGAGAGAGTTTGCCCTTGAGTATCGGACTTGTCGGGAACGGGTACTGCAGCAGCAGCAGAAGCGGGCTACATACCGTGAGCGCAACAAGACCCGTGGTCGCATGATTACCGAG
Seq C2 exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAGGCCCCCAATAACCTGTCTGTCCCAGTGGCTGTGGGCAGCGGGCCAGGTCAGGGTGATACTGACAATCATGCCAGCATGAAGAGCCTGCTTACCAGCAGGCCGGAAGATGCCACACACAGCCGACGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.909
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.9=100)
A:
PF0218118=FH2=PD(9.4=53.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAGGGCAGCTGGAGTG
R:
TCAGTATCACCCTGACCTGGC
Band lengths:
258-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: