HsaEX6044350 @ hg38
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67230066-67230791:-
Coord C1 exon
chr16:67230601-67230791
Coord A exon
chr16:67230314-67230506
Coord C2 exon
chr16:67230066-67230228
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCCTACTCTGACCTGCCTAGGTT
3' ss Score
7.16
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGGACTTTGAACAGCTGACTGAGAACCTGGGGCAGCTGGAGCGCCGGAGCCGGGCAGCCGAGGAGAGCCTGCGGAGCTTGGCCAAGCATGAGCTGGCCCCAGCCCTGCGTGCCCGCCTCACCCACTTCCTGGACCAGTGTGCCCGCCGTGTTGCCATGCTAAGGATAGTGCACCGCCGTGTCTGCAATAG
Seq A exon
GTTCCATGCCTTCCTGCTCTACCTGGGCTACACCCCGCAGGCGGCCCGTGAAGTGCGCATCATGCAGTTCTGCCACACGCTGCGGGAATTTGCGCTTGAGTATCGGACTTGCCGGGAACGAGTGCTACAGCAGCAGCAGAAGCAGGCCACATACCGTGAGCGCAACAAGACCCGGGGACGCATGATCACCGAG
Seq C2 exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAAGCCCCCAGCAACCCCTCTGTCCCAGTAGCAGTGAGCAGCGGGCCAGGCCGGGGAGATGCTGACAGTCATGCTAGTATGAAGAGTCTGCTGACCAGCAGGCCTGAGGACACCACACACAATCGCCGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'35-55,'35-53,38-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.338 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.9=100)
A:
PF0218118=FH2=PD(9.4=53.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTGAGAACCTGGGG
R:
CTGCTCACTGCTACTGGGACA
Band lengths:
246-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains