BtaEX0014626 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34977626-34978337:-
Coord C1 exon
chr18:34978145-34978337
Coord A exon
chr18:34977901-34978063
Coord C2 exon
chr18:34977626-34977826
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTTCCCCCTCTCTAGACA
3' ss Score
10.84
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTCCATGCCTTCCTGCTGTACCTGGGGTACACGGCAGAGGCAGCCCGTGAGGTCCGCATCATGCAGTTTTGCCACACGCTGCGGGAGTTCGCACTGGAGTATCGGACCTGCCGGGACCGGGTGCTGCAGCAGCAACAGAAGCGGGCCACATACCGTGAGCGCAACAAGACTCGGGGACGTATGATCACTGAG
Seq A exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAAACCCCCAGCAAGCCATCTGTCCCTGTGGCTGTGAGCAGTGGGCCAGGAGAAGGTGATGCTGATAGTCACGCCACCATGAAGAGTCTGCTGGCCAGCAAGCCTGAGGATGCCACACATGGCCGTCGCAGCAGAG
Seq C2 exon
GCATGGTCCAGAGCAGCTCCCCAGTCATGCCTACAGCAGTGGGGCCCTCCACTGTACCCCCGGAAGAACCTCCAGGCTCCAGTTTACCCAGTGACACTTCAGATGAGATCATGGACCTGCTGGTGCAGTCAGTGACCAAGAGCAGCCCCCGTGCCTTAGCTGCTAGGGAACGCAAGCGTTCCCGTGGCAACCGCAAGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-14/15=13-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGCACTGGAGTATCGGA
R:
CTCTTGGTCACTGACTGCACC
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development