DreEX6006116 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34338845-34342725:+
Coord C1 exon
chr7:34338845-34339037
Coord A exon
chr7:34340697-34340865
Coord C2 exon
chr7:34342552-34342725
Length
169 bp
Sequences
Splice sites
3' ss Seq
AACTATTTTTTCCCCCACAGACA
3' ss Score
10.7
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTTTCATTCTTTCCTGTTGTACTTGGGTCATCCTTCATACTCGGTGCGGGACACTAAAGTGACTCATTTCTGTAAGATCATCAGTGAGTTTGCCCTGGAGTATCGCACCACTCGTGAGAGAGTCCTCACTCAGAAACGCAAGCGTGCCGTCCACCGAGAGCGCACCAAAACCCGGGGCAAGCTAATCACTGAG
Seq A exon
ACAGAAAAGTTTTCTGGAGCAGTTACAGAGCTGTCTCTGGATAGCAGCCCATCCCCAGTGTTTTCAGCAGTAGAATCAGAGCCAGCCCAGGAAGAGCATGAAAACATGAAAAACCTGCTCATCGCCAACAACGACAACAAGCTGCTGCGCCGGAGCCGTGCTGTACGAA
Seq C2 exon
GTGTGGGCAGGCTAAGCACACACATGTCTGTAGCCAAAGAGGACAGCGCCAGCTCACAGGACGATGCCACAGATGAGATCATGGATCGTCTGGTAAAGTCTGTCACCCAGAATCCCACAGAGAGAGCGTCTAGTCCAAAAACACGGAAACGCTCGCGGCTTAACCGAAAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'26-30,'26-27,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.329 A=0.554 C2=0.980
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.5=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTTCATACTCGGTGCGG
R:
TCTCATCTGTGGCATCGTCCT
Band lengths:
243-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]