GgaEX7008055 @ galGal4
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1349462-1350510:+
Coord C1 exon
chr11:1349462-1349654
Coord A exon
chr11:1350088-1350244
Coord C2 exon
chr11:1350334-1350510
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTGTACTGCTGCAGACC
3' ss Score
7.93
5' ss Seq
GCGGTAGGA
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTTCCACTCCTTCCTGCTCTACCTGGGGTACCCGGCAAGCGCTGCGCGGGATGTGAAGGTGATGCCCATCTGCAAGCTGCTGCGGGAGTTCGCCCTGGAGTACCGCACGTGCCGGGAGCGCGTCCTGCAGCAGCAGAAGAAGCGTGCGGCCCACCGTGAGCGCAACAAGACGCGTGGCCGGCTCATCACAGAG
Seq A exon
ACCGAGAAGTTCTCTGGCATCACCGAGGCATCACCACCCGCCGTGGTGTCAGCCAGCCCCACGCAGCAGGAGCAGGCAGAGGTGGGCCACGAGAGCATGAAGAGCGTCCTGAGCTCGCCCACGGATGTCCCTGCCCGCCGCAGTCGGGGTGGCCGCG
Seq C2 exon
GGACGGGGCTCACCACTCCAAGCCAGGGCTCCCCAGCCCAGGAGGACGTTCCCAGCTCACCCGACGACGCCTCAGATGAGATCATGGACCGCCTGGTGAAGTCGGTGACGCACAGTGCCAACCCCCGGCCCTGCCCCAGCCGGGAGCGCAGGAGGTCCCGCGGCAACAGGAAGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198-'25-35,'25-34,27-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.962 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.5=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGATGTGAAGGTGATGCC
R:
CAGGCGGTCCATGATCTCATC
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]