HsaEX6044351 @ hg19
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67263696-67264409:-
Coord C1 exon
chr16:67264217-67264409
Coord A exon
chr16:67263969-67264131
Coord C2 exon
chr16:67263696-67263893
Length
163 bp
Sequences
Splice sites
3' ss Seq
CACCCTTCTTCTTTCTCCAGACA
3' ss Score
10.28
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTTCCATGCCTTCCTGCTCTACCTGGGCTACACCCCGCAGGCGGCCCGTGAAGTGCGCATCATGCAGTTCTGCCACACGCTGCGGGAATTTGCGCTTGAGTATCGGACTTGCCGGGAACGAGTGCTACAGCAGCAGCAGAAGCAGGCCACATACCGTGAGCGCAACAAGACCCGGGGACGCATGATCACCGAG
Seq A exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAAGCCCCCAGCAACCCCTCTGTCCCAGTAGCAGTGAGCAGCGGGCCAGGCCGGGGAGATGCTGACAGTCATGCTAGTATGAAGAGTCTGCTGACCAGCAGGCCTGAGGACACCACACACAATCGCCGCAGCAGAG
Seq C2 exon
GCATGGTCCAGAGCAGCTCCCCAATCATGCCCACAGTGGGGCCCTCCACTGCATCCCCAGAAGAACCCCCAGGCTCCAGTTTACCCAGTGATACATCAGATGAGATCATGGACCTTCTGGTGCAGTCAGTGACCAAGAGCAGTCCTCGTGCCTTAGCTGCTAGGGAACGCAAGCGTTCCCGCGGCAACCGCAAGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCTCTACCTGGGCTAC
R:
GTTCTTCTGGGGATGCAGTGG
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)