BtaEX0014631 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34979727-34980997:-
Coord C1 exon
chr18:34980593-34980997
Coord A exon
chr18:34980128-34980283
Coord C2 exon
chr18:34979727-34979909
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCACAATGTCAAAGAAA
3' ss Score
1.55
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
NATCTGGGGGAGGATGAAGACCAGGACATGCTGAACATGGAGTCTGTGGAGGCGGAGAAAGGGATCCCACCCCCACCGCCCCCCCCACCCCTGCTCTCTGGAAGCCTCCCACCTCCTCCACCTCCACCTCCCCCACCCCTCAAAAGCCCCTTCCCACCAACCCCACCCCCACCCCCTGCTGCCCCTCTTCCCCACTCAGCACCTGATGGCCCTGCCCTCCCCACCAAGAGGAAGACAGTAAAACTCTTCTGGCGGGAGCTAAAGTTGGCTGGAGTCCGTGGAGGCTCTGGCAGTCGCTTTGGGCCCAGCCCCACCCTGTGGGCCTCACTAGAGCCTGTCTCGGTGGATACAGCCCGGCTAGAACACCTGTTTGAGTCCCGAGCCAAGGACATGTTGCCTTCCAAA
Seq A exon
AAAGCTGGTGAGGGCCGCCGTACAATGACCACAGTGCTGGACCCCAAGCGCAGCAATGCCATCAACATCGGCCTAACCACACTGCCACCTGTGCACGTGATCAAGGCTGCCCTGCTCAACTTTGATGAGTTTGCTGTAAGCAAGGATGGCATCGAG
Seq C2 exon
AAGCTACTGACCATGATGCCCACGGAGGAGGAGCGGCAGAAGATCGAGGAGGCCCAGCTGGCCAATCCCGACGTACCCTTGGGCCCAGCCGAGAATTTCCTGATGACTCTCGCCTCCATCGGGGGCCTGGCTGCCCGCCTACAACTCTGGGCCTTCAAACTGGATTATGACAGCATGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-8/15=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=0.269 C2=0.246
Domain overlap (PFAM):
C1:
PF0218118=FH2=PU(17.7=48.9)
A:
PF0218118=FH2=FE(13.7=100)
C2:
PF0218118=FH2=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTAGAGCCTGTCTCGGTG
R:
TCCAGTTTGAAGGCCCAGAGT
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development