DreEX6006119 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34331622-34334288:+
Coord C1 exon
chr7:34331622-34332562
Coord A exon
chr7:34333736-34333891
Coord C2 exon
chr7:34334106-34334288
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTATTGTTTTTCCTACAGAAA
3' ss Score
10.19
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATCTTGATTTCTCAGATCTGATGGAGGAGGAGGATATTGATGTGCTGGATATAGACACTTTTGATACTGGCCTGTCTAATGTTATACCTCCACCTCCTCCTCCAGTGCCAGGACTGGGTTCTGCTCCTCCTCCTCCACCACCACCTCCTCCCCCTGGACCTGCTGGTCTGTTTTCACCACCTCCACCTCCTCCTCCTCCTCCACCTGGATTTGCTGGTTTGGCTTCACCTCCTCCTCCACCTCCTCCTCCTGGAGGTTTGAGTATTCCTCCACCTCCCGGACTCTTTACCACGTCCCCGTCACAGGGTTTGGATCCTGCTTTTGTGAAGAAACGGAAAACAGTAAAGTTGTTCTGGAAGGAACTGAAGCAATCTGACAGCCCCAGAAAGTGCAAGTTTGGGAGGGGAACAGTGTGGGCTTCACTTGATAAAGTGGATGTCGATACAGCCAAGCTGGAGCACCTTTTTGAGTCCAAAGGAAAGGATCTTCCAGTAGCAAAG
Seq A exon
AAAGGTGCTGAGGTGAAGAAAGCAGCAATTTCAGTGCTTGATCCTAAGAGAAGCAATGCCATCAACATCGGCATGACTGTATTACCTGCTATACATGTGATCAAAAGTGCCATCCTCACCTTTGACGAGTTTGCCATCAGTAAAGAAGGCATCGAG
Seq C2 exon
AAAATCCTAACCATGACACCAACAGAGGAAGAGAAACAGAAGATTCAGGAGGCTCAGCTGGCCAATCCGGATGTACCGCTGGGCACTGCAGAGCAGTTCCTGCTCACACTCTCCTCTATCAGCGGCCTAACAGCCAGATTACAGCTCTGGGCCTTTAAACTCAACTATGAGACCCTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=0.000 C2=0.131
Domain overlap (PFAM):
C1:
PF0218118=FH2=PU(16.8=19.7)
A:
PF0218118=FH2=FE(13.8=100)
C2:
PF0218118=FH2=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGCAAGTTTGGGAGGGG
R:
GCTGTTAGGCCGCTGATAGAG
Band lengths:
249-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]