RnoEX6060267 @ rn6
Exon Skipping
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37287517-37288965:-
Coord C1 exon
chr19:37288677-37288965
Coord A exon
chr19:37287919-37288074
Coord C2 exon
chr19:37287517-37287699
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCATTCTCCTAACCTTGCAGAAA
3' ss Score
9.93
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACCACCTCCACCCCCACCTCCCCCACCCATCATGGGCTCCTGCCTACCACCTCCACCCCTGGCTGCTCCTTTTCCCCACTCAGCCCTTGACGGCCCAAGGCACCCCACCAAAAGGAAGACTGTAAAACTTTTCTGGCGGGAACTAAAGCCGACTGGGAGCCCTGGGTGTTCTAGAAGCCGCTTTGGGCCTTGTCCTACCTTGTGGGCCTCTCTGGAACCTGTCTCGGTGGACACAGCCCGGCTGGAACACCTATTTGAGTCCCGAGCCAAGGATGTGCTACCCACCAAG
Seq A exon
AAAGCTGGTGAGGGCCGCCGGACAATGACCATAGTTCTGGACCCCAAGCGCAGCAATGCCATCAACATTGGCCTAACCACTCTGCCACCTGTGCATGTCATCAAGGCTGCTCTGCTCAACTTTGATGAATTTGCTGTCAGCAAGGATGGTATTGAG
Seq C2 exon
AAACTGCTGACCATGATGCCCACGGAGGAAGAGCGACAGAAGATTGAGGAAGCCCAGCTGGCCAACCCTGATGTGCCCCTCGGCCCAGCTGAGAATTTCCTGATGACTCTTGCTTCCATTGGAGGCCTGGCCGCGCGCCTGCAACTCTGGGCTTTCAAGCTGGACTATGAAAGCATGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625-'19-32,'19-31,20-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=0.212 C2=0.230
Domain overlap (PFAM):
C1:
PF0218118=FH2=PU(17.7=68.0)
A:
PF0218118=FH2=FE(13.7=100)
C2:
PF0218118=FH2=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTAAAGCCGACTGGGAGC
R:
CAGGAAATTCTCAGCTGGGCC
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]