MmuEX6037923 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107855542-107857504:-
Coord C1 exon
chr8:107856810-107857504
Coord A exon
chr8:107855937-107856092
Coord C2 exon
chr8:107855542-107855724
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCATTCTCCCAACCTTGCAGAAA
3' ss Score
9.14
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
TGGACTTCTCAGACCTAGGGGAGGATGAAGACCAGGACACACTGAATGTGGAATCTGTGGAGGCTGGAAAAGCATCTCCCTTCCTGTCATCTCTATCGCCCTCACTCTCTGGGGGTCCCCCTCCTCCGCCCCCACCTCCTCCACCCATCACAGGCTCCTGCCCCCCACCTCCGCCCCCACCTCTCCCCCCACCCGCCACAGGCTCCTGCCCTCCACCTCCGCCCCCACCTCCCCCACCCATCATAGGCTCCTGCCCACCGCCTCCACCCCTGGCTGCTCCTTTTACCCACTCAGCACTTGACGGCCCAAGGCACCCCACCAAAAGGAAGACAGTAAAACTTTTCTGGCGGGAACTAAAGCTGACTGGGGGCCCTGGGTGCTCTAGAAGCCGCTTTGGGCCTTGTCCTACCCTGTGGGCCTCGCTGGAACCCGTCTCGGTGGACACAGCCCGCCTGGAACACCTATTTGAGTCCAGAGCCAAGGATGTGCTACCAACCAAG
Seq A exon
AAAGCTGGTGAGGGCCGCCGGACAATGACCGTAGTGCTGGACCCCAAGCGCAGCAATGCCATCAACATTGGCCTAACCACTCTGCCACCCGTGCACGTCATCAAGGCTGCCCTGCTCAACTTCGATGAGTTTGCTGTCAGCAAAGATGGCATTGAG
Seq C2 exon
AAACTGCTGACAATGATGCCCACGGAGGAAGAGCGGCAGAAGATTGAGGAAGCCCAGCTGGCTAACCCCGATGTACCCCTCGGCCCCGCTGAGAATTTCCTGATGACGCTTGCTTCCATTGGAGGCCTGGCTGCGCGCCTACAGCTCTGGGCTTTCAAGCTGGACTATGAAAGCATGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'16-17,'16-15,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=0.212 C2=0.230
Domain overlap (PFAM):
C1:
PF0218118=FH2=PU(17.7=28.4)
A:
PF0218118=FH2=FE(13.7=100)
C2:
PF0218118=FH2=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTCCTTTTACCCACTC
R:
GTGGGCATCATTGTCAGCAGT
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: