BtaEX0014797 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43669440-43674705:-
Coord C1 exon
chr2:43674493-43674705
Coord A exon
chr2:43671676-43671696
Coord C2 exon
chr2:43669440-43669564
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTTCCACAAAAGACG
3' ss Score
2.12
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
TGCAAAATGGCCCAGCAACACCACCTGTACCACCCCCGCCCCCGCCTCCGCCTCCTCCCCCGCCGCCTCCTCCACCTCCTCCCCCGCCCCCTCTCCCAGGTCCTGCAGCTGAGACCCTGCCTGCTCCTCCCTTACCACCCCCACCTCCTCCTTCTGCACCCCCGCTGCCTGGGACGTCTTCACCCACAGTGGTTTTCAACTCAGGATTAGCAG
Seq A exon
ACGGGCCCATCAAGCTTTTCT
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAATTCAGAATGCCAGTTTTTAACTGGGTTGCCCTGAAGCCAAACCAGATCAATGGCACAGTCTTCAACGAAATTGATGACGAACGAATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(10.4=90.5)
Main Inclusion Isoform:
ENSBTAT00000038390fB2818
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACAGTGGTTTTCAACTCA
R:
GATCTGGTTTGGCTTCAGGGC
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development