MmuEX0019395 @ mm10
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:53108252-53114236:+
Coord C1 exon
chr2:53108252-53108458
Coord A exon
chr2:53112277-53112297
Coord C2 exon
chr2:53114112-53114236
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCTTCCACAAAAGATG
3' ss Score
3.69
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
CACAAAATGGAACAGCATCGCCACCTATGTCCCCACCTCCTCCCCCACCCCCTCCACCCCCTCCCCCACCCCCTCCACCCCCTCCACTCCCAGGCCCTGCAGCTGAGACTTCACCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTCAACTCAGGATTAGCAG
Seq A exon
ATGGGCCAATCAAGCTTTTCT
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAGTTCCGAATGCCAGTGTTTAACTGGGTCGCCCTGAAGCCCAATCAGATCAACGGCACAGTCTTCAATGAAATCGATGATGAGCGGATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-'38-28,'38-27,42-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.928 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(10.4=90.5)
Main Inclusion Isoform:
ENSMUST00000049483fB1711
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACAGTGGTTTTCAACTCAGG
R:
GATCTGATTGGGCTTCAGGGC
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types