GgaEX0018931 @ galGal3
Exon Skipping
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37160052-37163991:+
Coord C1 exon
chr7:37160052-37160252
Coord A exon
chr7:37161468-37161488
Coord C2 exon
chr7:37163867-37163991
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCTTCCTGCTAAGACG
3' ss Score
4.1
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
TGCAAAATGGCCCTGTGACAGTGCCAGTGCCACCTCCACCTCCACCACCACCGCCTCCACCACCGCCTCCAGCGCCACCACTGCCAGGTCCTGCCTTGGACACGGCTCCTGCCGCCCCGCTGCCCCCGCCGCCCCCGCCGTCAGCACCCCCCCTGCCCGGCACCGCCTCTCCCACTGTGGTTTTCAACTCAGGGCTTGCAG
Seq A exon
ACGGGCCGATCAAGCTCTTCT
Seq C2 exon
CTGTGAAAATCAAGAAGCCAATCAAGACCAAGTTCCGCATGCCAGTGTTCAACTGGGTCGCCCTCAAACCCAACCAGATCAACGGGACGGTCTTCAACGAAATAGACGACGAAAGGATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525-'21-18,'21-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(10.4=90.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTCCCACTGTGGTTTTC
R:
GATCTGGTTGGGTTTGAGGGC
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]