RnoEX0036405 @ rn6
Exon Skipping
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38651758-38657491:+
Coord C1 exon
chr3:38651758-38651943
Coord A exon
chr3:38655729-38655749
Coord C2 exon
chr3:38657367-38657491
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTTCCACAAAAGATG
3' ss Score
3.71
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
CTCAAAATGGACCAGCATCACCACCTATGTCCCCACCTCCACGCCTCCCCACCTCGCCCCCTCCACTCCCAGGTCCTGCAGCTGAGACTGTGCCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGTTGCCTGGGACTTCTTCACCTACAGTAGTTTTCAACTCAGGATTAGCAG
Seq A exon
ATGGGCCAATCAAGCTTTTCT
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAGTTCCGAATGCCAGTGTTCAACTGGGTTGCCCTGAAGCCCAATCAGATCAACGGCACTGTCTTCAATGAGATCGATGATGAGCGGATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(10.4=90.5)
Main Inclusion Isoform:
ENSRNOT00000085545fB5623
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCTGGGACTTCTTCACC
R:
AGTTGAACACTGGCATTCGGA
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]