Special

RnoINT0061638 @ rn6

Intron Retention

Gene
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38651758-38657491:+
Coord C1 exon
chr3:38651758-38651943
Coord A exon
chr3:38651944-38657366
Coord C2 exon
chr3:38657367-38657491
Length
5423 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTATCTCTGATAACCTTCAGCTG
3' ss Score
6.16
Exon sequences
Seq C1 exon
CTCAAAATGGACCAGCATCACCACCTATGTCCCCACCTCCACGCCTCCCCACCTCGCCCCCTCCACTCCCAGGTCCTGCAGCTGAGACTGTGCCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGTTGCCTGGGACTTCTTCACCTACAGTAGTTTTCAACTCAGGATTAGCAG
Seq A exon
GTGAGAACCGGGATGGAAATGGAGGTCCTGGCTTGTGAAACCCTGACTTCTGTCTGTCTGGAGAGCTAGAACTGCTCTTTCTCATCTGTACACGTCCCTCTGAAGGACATACTGCTAATGTAGCCGGTGAAGGGAAAACTGTCCTTCATGAGAGAGGAGTATTTGTCACACTCGTCCTAGCAGTTCTGACCTTGTCACCTAGTATTTCCACTGTCTTTACCTAGAGTGGCCAGAGCTCTGGACTGGGTGCTAATAGTGAGCGTTACTCTAGTCTAAGTTATCGGGAGTGTCATCTGTGGAGGAGACCATGTCATTGAGTTATTACCTGGTGCAGGGTGCATGTCTTCTGAGCATTTGTAGGCGTCAGGATTTGCCAGCGTGGTTTTAGGCTTCAAGGGGAAAGGGAACAACAGCAATTTCTTCTTCTCCTTTTTTTTTTTTTTTTAAAATGATTTGAAAAGCTTCCAAATAATTCATGTTCTCTTGCTCATCAGGAGGTAAGGGTGTGCCCTACCTTACTGGAAGTAAAAGGGAGGCAGGAGAGGGAGAGGAAGGGGATTATTCCAAAGCCTTGAAGTAACTTACTATTTTTGAGTCTCGGAAGGGAAATTTTACTCTTTAGTACTGAGCCATTTCAGAGTGTCGCTGAGAGTTTGGAGTTGTTTGTTCTGAGGTCCCGTCCTGTGACAGTGGGTAGCACTGCCCTGAGGTTACCACCTGTGCTCTGGGGATCTCTGCTCTGAGCTGCCTGTCCTGTGCTACTGAGTAACTGCATTGAGGATGGGACCCTTTGATACTGGGTAGCTTTTTCCGTCATCATGGGTAACCCTGCTTGGAGGTAGCAATCCCTGTGATACTAAGTAACTCCCCTCTGAGGTGGCTGTCACTAAGTAACTCCCCTCTGAGGTGGCTGTCACTAAGTAACTCCCCTCTGAGGTGGCTGTCACTAAGTAACTCCCCTCTGAGGTGGCTGTCACTAAGTAACTCCCCTCTGAGGTGGCTGTCATGTTGAGTTTCTGCTCTGAGGCTGCCATCCTGTGACAGCAGACGGCTCTGCTACTGGGAGGCTTTCCCAGTGATACTGTATGGCCGTCTTAGTTTGCTTTTGGTTATTGCTGTGATAAACACCCTACACAATGCAACTTCGAAAGGGAAGGGTTTATTTTAACTTAGAGTTTGCCATGGAGAGAAATTAGGGCAGGATCTCAAGGCAGGAAGCTGGAGGCAGGAACCGATGCAGAGGCCAGGGAGACATGCTGCTTACTGGCTTGCTCCCCATCGTTTGCTTGGTCTGCTTTCTTATACAAGGACCTAGGGGTGGCATAGCTCAAAATGAGCGGGAACCTCTTACATCAATCAGTAATCAGTAAATTGCCTTACATCTCGCTTACAGGTCAACGGAGGCGTTTTCTCATTTGATGCTTCTTCTACCAAGATAACTCTTAACCTCTGTCTAGTTGACAATAGCAAACAAACAGACAAACAAACAGACAAACAAGCGAAAAAAGGAACCAATACACTAGCACTGCTCAGAAGTTGCGACTCTGGATTACTGGGTAGCTCTGCTCTGGGGTGGCTGTCTGCTGCTGTGACACTAGGTAGCACTGTTCAGGAACTCCCTCAGTTACTGGGAGCTGCTGCCTTCTAGTTTAGCAGTTCTCACCTTGTATATCACGACCTCTTTGGGGGGAGTTGACGGCCCTTTCACAGCGGCCACTTGTCAGATATCCTGCAGATTAGGTATTTACACTATGATTCATAACTAGAAAGTAGCAGTGAACAAATCGTATGGTTGGTGGATCACCACAATGTGAGGTGCTGTATTAAAGGGTCACAGCGTTAGGAAGGTTGAGAATCCCTGCTCTGGTTCCAAGGCTGTGGTGGTTTCTAGTCTGAAGGATGGATAGTCTTTACTATAAAGATTTCTTCTTCTCCTCAGTCCCTCCATGGGTTTCCTCAGCAGCTTTTTCTGCCCGCCCCCTCCCCACCCCTCCTCATCAGGGATAATTTCTCCAAGTGACTACAACCCTTTCAGCCATCCAAAAGTTTCTTGAAGCAGATTTGCCCACCTCAGATTCTGCTCTAGCAGCGACATCTGTAAAATTATCAAGGATACCATGGTAAATTTGTGGCTTATTTTTACCCTTCAAGATCTTCCATGTTGACCACTTTCTTCTAGAACTTTTATTGCTTCCGAAGAGGAAAGGTGGAGGAGAGTCATCACGGAGCAATTGGATTCTGAATGTAAATAACAGGGGCTTACCGTCTCTGGGTCTCTGCTCTGTCACCAGGCTGTTCCTGGTGGCCGAATGTGGAGGCCATCATTGTCTCGTGCACACAGGTCACTGACTAAGCTTTCCTTGTAGCTCCGGGTGAGCATTCTCTGTGAGATATGTCTACCATGCCTCGCCTGGTGCTGCTTCTCTCTCCATCGCAAAAGCTAACCTGTGGTTCAGCATCCGCATGCATTCACAGGAGCTGAAGTAGAGCTCAGACTTTGGCAGGGAAATGGGCGGAGGCTGCAAGTCCAAAGTGCCTTTCTTCTGGACAGCCATACACCTTTTTGTTTTGTTTTGCATTAAGCCTTTGCAGCTACTCCATTTTTAGCTTTGTTAGCTCTAGGGTGAGCTCAGCTGATTACGGCTAAGCTCAGGACCCTCATGGGTCTCCATGGTTCTCCTGCACAGTAGAGCACCATAGGTGGGATTGAAGAAGTCCTCTTTATCTCATCGACTGTCTGCCAATAGTTATAAGATGTAGCCTGTTTTATAAAATTAAAAAGGCCCAAGTGTTTCATAATTTGGGATTAGGCATTTTCTCCAAGGCCTCTGATCTCCATTTTATTTGGCCTTAATTTGGCTTCTAGTTCAGAGTAACTGAAGCTGATTTTGTGAAATATTCTTCCTGTATGTCCAGTGGTTTTGTCTCTGGAATCCAGAGGCCTGAGAGAATCCAGATACCTCGGTAGAGGTAAGAGACAGCACTGAGGGGCTATGCCCATTACTTCCTGGAAGTCCCTTAGTCCGTAGGCCCACAGTGACAGGCTACCTATCCATCTCGGCAGTGGACAAGAGAGGACACAGCAGGGAGTCAGGAGAAAGTCCTCATAGTGTGCCTCTAGTTGAAAGAATGCTTTGGATTTCATAAAGAAAAGTGTGACTGACGTGGTAACAGTCACTCACACCTTCAAGTAATGTATGTAAGACATCTCCAAGTCAAACGAAGCAATCTGATTCCTTTCCTGAGGTAGGTCATCTGTGGACTGAGGCATTTTTCTACTTCAGTCTTAAAATTTGTTGACTCGGGGGCGTCTTAACCGTGTGGCGCAGAGTTCTGTGATGAGCTGCTTGCTGCTGCCCTCAGGATCCTCACAGGTAGCTGCCTGTGCAGTCGGTGGCCTTTGCTTCGCTTGGAGAAGATATGCTTGAATCCTCTCGGTGTTTGACTTTGGCTGATTCTGTGTTATTAAGACCTCGTTTCCAGCCTGTGGAATAGTTAGTACAGTTCACTGTGCCTGCTGGCACCATAACAACAAAATATTCTCTTTTGTTTTGTTTTCTCTTTCTCCCTGAGAGGGGGTGAAAACACAGAAACACAAACAAAACCACACAGCGAGTTCAAAGGCAGGAGAACGGAGTTTTGGCTTTGTGCTGCCGAAGTGTGTCCACGAAGCATGGCGTTCTATGGCAAGAGTGTTGTGAACTGCTGGGCCACTTGACTCTAACTGTATCTAATCTGAATCTCCATATATTTTGTGTTTTCTGTTCTCTCTGCTTCCACAAAAGATGGGCCAATCAAGCTTTTCTGTAGGTTGCTCCTCACCGAGTGTGTTGAGTGTTTCCTGTGTGTTCTGTTGGTCACCCTGTGCCTTGACATCTCTCCACTCCATCGTGCTTTGAGCCATTGCATTTGACATTGTGTCTCCAGCTAGTCTGGGTGTTGGCTGACTGTGACTCCAGGTTTGCCCATGTGTTTCGGCACAGTTGGCTGTATCTTCCCAGGACCCCCTACTGCCTGTGGCTCTAATGTGTGGAATAACCACCCATTGAATGCTACTTTCTTGAGTTTGAGTCCTGGGGTCACAGTCTATGTCCTCGGCACCTATAGGCCCTGCCATCTGCTATACTTCATGCCTAGCTGAAGTCAGGAAAATTTCCCTTACTTGAGTTGAAAAGATACTCCCCCCCAACCTCCCTTACCACAACCCCCTGCCCTTTGGTTCAAGGGTCAGTTGGAGAAAGCCTTTGCCTACAGAGGACATTGGTTCTCCTGGGTAGTGCGGAGGAAGCGTAAGTGTGACCAGGGGTCTCACACACTGATGATAATGGGGACGAGGGTGCCATGTTCGGTGATAGAAAAGCCTGTTTTGGCAAAAGCTGTGTCTCCGTGTTGCTGCATGCTTCTGTGTGGATTGACCTGATGCTATTCCTTCTCTTTCTGTGGCCTTTGTAACTCTGGAGGAATGAGAGGCATTATCTGTATCCCTTTTCAGTAAACATCCATGGAGGCAGGGTGCTGGTCATCTCTGTTGTGTTCTAGTCCACAGCCTTCCTTAGCTTTCTCCCCACTTCCCTGCTGATAATGCGGAATAGTGAAGCTCACAGTGGGCAGGTGGGGGCTGGGACAGTGTACATAGGGGCGTATATAGCTCAGTTTGGAAAGCCTTGTTTATGATGTATAATAGCATATAGAGCGGTAAATGGTTCTCTTTTAGTTTGTATTCTCAAAATGAGAGGCGCTAATTCCCTTTAGCCCATACATAGTAGATCGCAGCCTCTCTATTTTAGTACGTTTAGCAAGTTCACTGAGGATGTCTCGATAAAGATAGCTAACTCCTATAGAAGGGGGCGCAGGGGGTTGGGGATTTAGCTCAGTGATAGGGCGTTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCTCACCTCTGGAAAAAAAAAGGAGAAGGGGGCAAAGGGATGGTGGCACTCCTTTAGAAGGAGCACTATGATCTCTGCCCAGGTCCTCTGTAGTCTTCACTGTTCTCTGATGTAGGCCATGGATGCTCTTAGTCTACCTGAAATAACTCAGCAGCCAGTGTAGTCTCTATATCACGGTCACCCACCGGAATGCATAATCCTGGCTGAAGATCATTGACATTTAAAGCATACATATATATCCTAGGAGCAGGAGGTGAAGACACCAGAACTCAGGGCAGTTTCCCCTCTGTTAAATCTAGTTGCATTGTTTCATACTGTAACTTAGAAAGCACTCCAGTGTCAGGCAACCAAATGAGGACCTTGAATGGCTCTGGCCGAGTGCCACTTGTCACTTGCCGTCTTCCTCCAGCGTTAAAGTGTCATCCGCAAGGACTGTTGTCTTAATGTTCCCAGAGGTTACGAGGTTTTAGACAGGACTTAATTTCCTTATCTCTGATAACCTTCAG
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAGTTCCGAATGCCAGTGTTCAACTGGGTTGCCCTGAAGCCCAATCAGATCAACGGCACTGTCTTCAATGAGATCGATGATGAGCGGATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.923 A=NA C2=0.028
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0218118=FH2=PU(10.4=90.5)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]