GgaINT0047756 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37160052-37163991:+
Coord C1 exon
chr7:37160052-37160252
Coord A exon
chr7:37160253-37163866
Coord C2 exon
chr7:37163867-37163991
Length
3614 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTTTCCTCCGCTGTCTTTAGCTG
3' ss Score
9.27
Exon sequences
Seq C1 exon
TGCAAAATGGCCCTGTGACAGTGCCAGTGCCACCTCCACCTCCACCACCACCGCCTCCACCACCGCCTCCAGCGCCACCACTGCCAGGTCCTGCCTTGGACACGGCTCCTGCCGCCCCGCTGCCCCCGCCGCCCCCGCCGTCAGCACCCCCCCTGCCCGGCACCGCCTCTCCCACTGTGGTTTTCAACTCAGGGCTTGCAG
Seq A exon
GTAAAGCACCCGTGTGTCTGCCCGGCATGTGGAGTGTAGACTGGGGGGGGCAGTATGCAGAGGTGGGCCTTCTTTTCTCTTAGTCCCCTAGGTAATACGCTTCATCTCTATCTGTTGTTATACTTAGAGGGGTTTGTGAAAGGAAAGATGATTAATCAATTAAACAGATCTGGTTTGATCTGTAGGAGAGAGCTTCTTCAGTGAAACTGAAGCTGCTGCCAGAAATATTTTTCTAACGTGATCATTTTTGGCTTTAAATGAGCAAAAGTGCAGAACTTCATGGTTTTGATTTCTTCCCAGCGCACGGTGAAGAAAAATCTGTGCAAAAGACTAGTAAACTTTTTGTAATGTTTTGGAAGGAGGGAAAATTTCCTGCCCATCTTTAATCACGTTTTTATGTGCTCTCTATCCTATGCCAAGCATCCCATGCAGCAAATGGCTGTTAATTGGTATCACACTCCTCCCACTCCAGGAAATCTCGAGAGCACGTTATGATTTCAGAAAGAGAGACTGAGGAGCTTTTACTCTCCCCAGTGGGTTTTGCAGAGCAGCACAGTGGTTCTGCAGCATGCAGAGCTCATTGGCACCATGGCTGGGGCAGCAAAGCAGAAAGCTGGCAGGCAGGTGTGCCCTTCTGCCTGGTTGTGCTGCACTTTGCTGTGCTGATGGGCTGGGAGGGATCCATGGAGGGGATGGCATCACCATACCTGTGGTCGGAGCTGTGTTCTGCCTTGCTGCTTTTCAACCTGAGGCTGCTGGCTTGATTTTTTTTTTTTTTTTGTTATGTCCTTTACCACGTGCTGCGGGGAGAGGTTTTATCAGAGCAGTTTACAGTGCCCCTCTGGTTTTTGCTGCCAGCTTTGTGCCTGGCCTGAGGTGCTGGGGCGGTATGTCAGGCTGCAGAATGTTTAAAACCCAACTGAGTATCCAGAAGGTTCCCCAGTTATGTATGCAGAGGCCGATGGTGGGGGGTGTTTGATGTGGCTGTGGTAGAGGTGGGACATGTCCACAGGCAGGCAGGGTGGGCATTTTGTAGTGGGTTAGAACTGAAAGGAAAGGTGAAAGCGCCTTTTCTTGATTAAACCGGTTGCATAGCAAGTAATGTTTCTCAGGGCAGGACCCTTCTGGGCTGGGGGGAAATGGGTGCAGCAATAAATCCTGCTGTTCTGACCACTGCTAACATATTTTTCTCCGTTCTTTCTGCTTCCTGCTAAGACGGGCCGATCAAGCTCTTCTGTAGGTTGCTTTCTGCTAAGTATTTAACTACCTTCTCCCCTTCCCTCTGTCCTGCTTTGCTGTGCCCTATGTGTGCCCGTGACTGTGTGTGTCAGTCCAGGAGGTGGCGGGAGGGCCGAGGAGGGTGCAGAGGGGTTGCTGGACACAAGGCATGTGTTAGCTTTGGGTTTGCTGCCAGCCAGCAGGATTTGGCCTTCCTAGGCCCTGATCCAGCAAAGCACTTCAGCACGTAATTAAGATGTGGCTTCTTTTGGGCTGCCCTCCAGCCATGACCGTGTCCCCACTGCGCTGCCCTGAGCAGTGCAATGCTTAAGGACATCACCTTGCCAGCTGACAGCATGTCTTGGTAAGAGAGGAGATTTGGAAGGAAGAGATTTTGCAGGCATTTTGTTGAGCTGCAGTGAGAGCTGGCCCACGGGGCGTTTAGCTTCCTTTCCTGTCCTGAAATAACCCGGGAGCAGTTACTAATCTATTCTAATATATGCATGAGATGAAGATGTGTTTTTCATGGGTGTTTTAGCTTGGAAAGAAAGTCTTTGATTGTAGGAATTATTTAGGCTTAAACACATTCATTGTACAAAGAGTAAAACCCTTTGGTTTTAGATGAGCAGAAGTTGATGATGTGTTCATGTCTTCCAGTTGGATAAATATATTTCTCAAAATATTCAGACTTTCAAGCTGAATACTGTGTATGTTCCCTGTTACTCACAGACATTTGTTTTGAGCAAATTCTCTTGCTGGGAATTTATTCTTTGCAGCATCCTTGCAAAAGGAGCATGACTTGGAATGTACATGGACACACAGCTTGACTGTTGCTTTAGAAGTGGTAAGACAAAGCAAGAGAGGTGTTTTCAGCATTCACCTGGTTCTGGTGCACAGCAGGAGGCTGTGCCCTGAGACTGGTGGTCTGTCATGGCAAAAACATGCAGCATTGGTAGGGGAAAGTAAAACAGTTATTTGCTCAAGTGCTTTGCAGACTGGGAAAGCGTCTTCTGAAATCAAGGAGAAAATAATCTATCATCTCTATCTATCTATCTAGCATCAAATAGTTAGCAGGGTGCCCCTGCTATGAATGCAGGGTAGGCAGCAGTCAGGACTTCCTTGGAGCAAGCACTGGATTGAACTGAGTCAAACAAAACCGTCCCCACCTTGGGGATGTGAACCTGCTGTGGGGTGCAGCGAGCCCAGAGCTGGGTGGGAGGGTCGGGACATGGAGCATGGTGCTGCTCACCCTGCCTGGCCCTGCTCACAGGGAAGGGGCTCTTTTCTCCAGCACTGGAGATGAAGGACTGGGGCTTCTGGTTCCTGTTTGCAGTTTGGAAAGAAATGGTTTCTTTACTATAATTCTGGAGTGACACATTGGTCGATCACTGTAATGAAGATCCTGAATTTGCAGCAACTAACAGCCATGTGTTTTCATCAGCATACAAAGAATTGAGCACTGAATTACCAAAAACATTTGTGTGCCCTCCAGATCTGTTAGGAACAGGAATGAAGTTGTTTTCTTTGCTCTGATGTTACTTTTTGGACTGTGTTCACTGATAAATGAGAGTAGTTTCTCTTTGTAGGTTACTGAAACACTAATTCTGCATGATGATGAAACCCATTATTTAAACCTTGTGAAAGTTCATGTGTGCTGCAACCCCTTGTTTTGGCTTTCAAAGACAGCCCTGACCCCTCTGAAAGAGCACTGCCGCACTGCAGCAGTGGAACCTTGGGAAAGGAGCTTTTTTCCTTCTTGTCACCTATTCTGGGTTGAATTTTGTGATGCATCTGCTGCCAGTGACACATCCTTCCTCCACATCAGTGATGGAGATGTGTCCTCAGCTGACAGTTCTAGCTGTTGCTAAAGGCTGAGGCCACCATGCCTTCAGTGATGTGGATGGTACTGCTTGCTGTGCTGCCCTTAGCAGCTGGGTTTGGGCTGCATGTGCTCAAGCAGCCCTACACTGTGCATAGCCATGCACCAGCTCGCGCTGAGGTGGGCTCTGCAGCCAGCAGGACAGGGTTAAATTTGGCTGCTCCATCCATTTTCTTCAGTGTTTAAAAATAGCATGGGCTTTTAAAGCAGCCCAGACAACATGGGGCAATAAAAGTAATAACACATTTCCTTTTGTGTAGTTTTCACAGCCTCTGGCGTTCAGTCCCATTCTGCAGGCGCTGGCCCTGAAGCAGCCAGAGGGTTGGATAAAAGCCTCTCTGCACTGCCTGCTTGTCAAGGCAGCAGGATCTTTTCAGGCTTCTCAGGGTGATCATTTGGCTATGGCCAGTTCTTCCTCCAGTGCTGGAATGCCAACTCCAGAGGCCACGGTCTGGGCACATGGGGTGTTTTTCAGTTGCTGAGGAGTTGATAATTTCCTTTCCTCCGCTGTCTTTAG
Seq C2 exon
CTGTGAAAATCAAGAAGCCAATCAAGACCAAGTTCCGCATGCCAGTGTTCAACTGGGTCGCCCTCAAACCCAACCAGATCAACGGGACGGTCTTCAACGAAATAGACGACGAAAGGATCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218118=FH2=PU(10.4=90.5)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]