BtaINT0063184 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43669440-43674705:-
Coord C1 exon
chr2:43674493-43674705
Coord A exon
chr2:43669565-43674492
Coord C2 exon
chr2:43669440-43669564
Length
4928 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATTCTCTTTGACCTCTGTAGCTG
3' ss Score
7.56
Exon sequences
Seq C1 exon
TGCAAAATGGCCCAGCAACACCACCTGTACCACCCCCGCCCCCGCCTCCGCCTCCTCCCCCGCCGCCTCCTCCACCTCCTCCCCCGCCCCCTCTCCCAGGTCCTGCAGCTGAGACCCTGCCTGCTCCTCCCTTACCACCCCCACCTCCTCCTTCTGCACCCCCGCTGCCTGGGACGTCTTCACCCACAGTGGTTTTCAACTCAGGATTAGCAG
Seq A exon
GTAAGAGCACAGAATTAAGAACCAGATACTTAACACGGAGAGTCGATTGTCTTACCTCCAGAGAGTTAGAGGCATTCTTTTCAATTCCAGGTCTCTTCTAAAATCACGTGTTTGCTCTTAATGTAAGACCATTTCCGCTAATATAGCCACTAGAGGGGAAATTGTCACTCAGGGGTGGCATTTTTCTCTCAATAGCCTTTGTTGTGGAAGTTCCAATCTCCTGCTGTCTTCCCACCTTCTCTCTCTCCACCTAGAGAAGGGAAAAGAGACAGGTTACCTTCTTAGGGATCTTTAGGGGCTCAGGAAACAGGACCATCCAAGCTCTGACACGGCATGTGTGCTTCCAGTGCTTACGGCTCTTTTCTTTGAAGGTATTTTCAGTGGCATCTGCGAAAGAGGAAGATGCCTTTCTGTGTAACTGTCTGATGTGGGCTTCCAGGCATTTCTTCTGAGCATTTGAGGACATCACAATTCATTATAGTGAAATTAAGCTTTGAAGGGAAATGTCCCACGAGCAGTATCTTCTTGCCTTGAGATGCTTCCTGTTGATGCACGGGGTGCTCCTGCTGCCAGGACAGGGTGTGGATTTCCTCCCCCATCACAAGTAAGGCCGGGCCGGTGTGGCTTGAGAGAAGGAAAATTGCTCTAATGTCTTGAAATCTTAAGTTCTTATTTTTGACTCATGAAAAGGAATTTTTACTCTTTTCTAAAATACTGCAAGCTGTTTTCCCAGTCAGAGCGTTTTCCCTGCCATTTGGAATTGCTCTGAGCGTTGTGGAGCCATCCCTTTACCACTGGATAGTTCTGGTTCCTCATCCGTTTCAGTCCCTTCGTGAGGTCTCTTATTTCCAATGAACTAGCACTCTAGTGGTCTCATTTCCAAGGCTGCAGTGGTTTTCAGAGCCTTTCGCCCCAAGTCTAAATGATAGTCTTAATTATAGGCGATCTCCTAGCCTCCCTCTCTTAGCCTGCCTGTGCCATCGGCAGCTGGACTGGCCGGTCATTAAGACTAATTCATCCTAGTGACTAAAGCCCTTTTCAACACCAGCAAACCACCCATAACAAACTTGTTCTACATCAAATCTGTGGTGTTTACTTCCACCCCTGTTCATATAAAACTGTCATGCAAGATGCCTGTTCAAAGTCGTGTTGACAGTAAACCAGTGACTTTTTTCAACCTTTGAAGATCTTCCTCGTCTGCTGCTTTCTTGTAGAACTTTTATGGCTTCTGAAGGACAAAAGTTAAAGGAGTGTCACAGTGAGACTGTTGGATTTTGAAACACGAGCAAACAGAAAACCTCTTAAGGAACCGCAGGAGTCTATTCCATCAACAGGCTGTTTTCAGTGCTGTTGTGGAAGCTTGTCGTTGTCGTGCGCACCCAGGCCCGGGGATGAGTGCACCAGGAGCGCTCACCGTGAGATGTGTCACCCCGGCGTCGCTCCTTTGGTTCTGCTTCTTTCTCTCTGGCAGAACCTAATGTGCATACACCCTCCACTTCCATTCACCTGGGCTCCGACTTGTACCTCTGAACTGCCATGGCCGAGAGAAGAGCCAAGAGGCTGAGGTGCGCAGGTCCAGGGCTCCCTGCTGAATGAGTCTTGGCCTCTCAGGTTAAATGTTTTGCCTGGGTTCTTCCTCCTGCCTCATCTTTGCAATTTGTTGGATCTGTTGATTTGCCTCAGTTTTACAGTGAGACTCTGTGTTCAGCTGATCATTCACGGCTCCTGCCAGGGTTGCTGCATTTGGAGGTTGTCCCCTTCTTGTGCAGTTTGAAGGACTGGATGTGGAACTGAAGAAACTCCTCTTTAGTGCCATGAACATCCACTAAACAGCTATAAGATGTTCTGTTTATCAAGACGTAAGGATTATGAGATCCTTATGAGTCTTTGATAGCTTGGGATCAGGCAGTTTCTACAAAGCCTTTAATCTCTTTTCATTACTCGGCCTTAATTTGACCATTAATACTTAGTGGTTGTAGCCCATTTTGTGGGCTGCTTTGGGCTACTGGCCGCTTTGCCATTGTGTTCAGTAACACGCTCTTTCTGAAACCAGGAGGTCAGACAGAATCAGGATGTCCCCGTAGAGCCAAGAGACAGCTGAGATGACTTGCCAAGGACTCCCAGGAAGCCAGAGACCTGTGACATCATTAGGCTCCTGGATCTACAGGCAACTGGATGTCTTAGTTCTTTAGTAGGCAATCAGCAAATATGTTCTTGGCGACCAAGTCAGGGGACCAGGAGGAGGTCCCTAAGTTTATCTTGTTGATTTTTCTTTGCATTTTATAGAGAAAGTATTATTAGTGTGAAGCATGCATTCAAAGTGTAAGGCATGGCTCCTGAAATCTGTTGGATCAATCTGGTTCCTGTTTCTCGGTCAGATCATTGATGACAGGCCTTTGGGTAATCTTTAACCTTTGCTGTCTCTTTGGAAGAATGTGTTTTCGAACTTCACAATGAGAATTGGGAGTTCAGCTGATTATATTTTTTGTTAAAAAAAATTGTTAAGATCTTATGGAATACCTGGTACCAGGTCAATATGGATGTTTGGGACCACTGTAATGAAATCATCTTTTCCTCTCTTCTAAAAAAGAATTGTTTAAAAAAAAAAAAACAGTAAGGGTGTCTTTAAGGCAGGCCTGAATGGAAATGAATTTTTGGCTCTGCGCTGCCTGGTGAAATGTGTCCCAGAAGTGTGGAATTCTCTGCTAAGAGTATGTGAACTGCTGAGCCGCTGGATGCTAACCATATCTAATTTTTTTTTCTGTATTTTCTTTGTTCTCTCTGCTTCCACAAAAGACGGGCCCATCAAGCTTTTCTGTAGGTTGCTCCTCCCTGAGTGTGTTGAGTGTCTGCCATGTGTCCCCGTGGGTCACACTGTGCCGTGACATCCCCCCATCTCCCATCGAGCCATTGCATTTGCTCTGTGTCCGTGGGGAGGCGCGGTGCTGGCTGGCAGTTGTGGTTCCAGGGCTACCCGTGTTTTAGTTGAACCTGTAAAAGAGGTTATGGCCCATTAGGCAGACATCCTGGACTTCAGGCACCATGTTCCTTTCTCCTTGGACAGAGGACTGTTTTCTAGTTTTATTTTCATAGTTGGATCTCAGGGCCTCAACTCCGGAAGGGTTTTAGATTTATCCTGAGGGAGAGAAACAAGCTCCTCCCCAGAAGAAGGGCAAGCTGGGTGCTGGGCATCCCCTCCACCTGGGGCCCAACTGTCTCCACAGAACACCACCACTCCCCACCCCACCCCTAACACACAGCCACTTTCTAGAGCCAGAACACTGGGAGCACGATGCACATGGTCACCTAATGACCCCTCCTCTGCTAACCTCATCCCCCTTCCCCAACTCCTCAGGGTCTCTTTCTGAAGAGAACATTTTTTTCGCCTGTGCTCTGATCTCAGGCTTATTCCTAATCTTGCTGAAAGAGATAGAAGTGGGATGGCTGCCCATGGAGTGACTTGTAGGGAGTGTCCTGTGGCCTGGAGGGATGATGGGAACAGGTGATGCTGACCTGGCCGCCTCAGGTTATGACAGGAAGGTGCAACCTGCCCCCCAACCCCTACCTCTTCTCCCTGAACTTTGTTGAGGCGCCAGACTAGAGGAAGTGCTGGTCCTTCGTCCCCTGGCAGACATGGTTCTTCCTGGGCAGCACTGACAAACACGGTCAGCAGCAGGCAGTGGGGGCTAAGGTGTCGCATCTGGGGGTGGACGGCCTGGTTGGCGAAAGCTGTGTTTCTGTATCCCTGCATGCTTCTGTGTGGATCTGTCAGATGACATTCCTGCTGTTTCCGTGGCCTTCGTAACTCTGGAGGAACGAGAGGCACTGTCTGTCCCCCTTATTGCAGTCAGGCGGGCAGCCAGGTAAAAGCCCACTTGTGTGTTACGTTTCTTTTATTCTGCACTGACTGAACTTCTTCTTCTCCCTCTCTTCCCACGTAGTGTGGTGTGCATCCTGAGACAGACTTGGAAGGTGAATATTCATAGCTAGTTGGTTTAGGAAGACGTCTTTATGTTCTGCAGTTAATTTATGGACTTTTTAGTGGATTATCTTTTTGAGCTTATTTCCCCAAAGTAAGAGGAGTTAGCACCCCTCCGCCCCCATCCCCTCAGAGATAGAACCCTTTCTATTAAGAGGTTTCCAGTGTTTTTGATGAGTGCATTCTTACCTTCTAGTTGCAGGTAGCTGACTCCTGGGGAGACGTTGCTCCTTGAAAGAGGGGGCAGAGACTGCAGCCCTTTTCACAAAAGCAACGCAAACCCCCATTTCTAAGTACCCTTTTTGTCTTCTTACACATTTTCTGTTTGTGGACTTGCACAGCCCTTAGTCTGTTTGGAATAACTCAGCAGCCAGTATAATCCCTTTGGAATCATCCGTAGGGTTGTGTTGCTGTGGCTGAAAGGCAGCCTTCTGGACCTTTCATTCCTCGTGGTTTAGGCAGATACTATCTGCAGCCTCTGATCATCACTGAAGATTTTTCTTTTTTTAAAATAAATGTTCAAGAGCCAGAAATTTAGGATGTCAAAATTACACTCACGTTCATGCATGTCAAACCAAGTGACACAGGGTATTTGCCCTCTCTGCTATCAAGTAACATGAAGAATAATTTTTACTCCCCGACACTTTGTGCTAAGCATTGTCTTGACACTGTGACTATTTCAGCCATCCAGTTGCCTACGTTAAAACAATAAATACAAGTAAAAAGCCCAGGGTTTAGGCCTCTTTAGCGCGCTCTTGTATCAGTCAGCCAAATGAAGACCTCAGGTTGCTCTGCCCAAAGCGTTGTATGACATTTTCCATTTTAAAAACATCTGGCCACCTCTTGCCAGTCTTCCTCCAGGGTTAGAGTGTCATCTGCAAGGACTGTTGTCTGATTGTTCTCAAGGGTCTTGGTGGAATCTTCATTGCATTCTCTTTGACCTCTGTAG
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAATTCAGAATGCCAGTTTTTAACTGGGTTGCCCTGAAGCCAAACCAGATCAATGGCACAGTCTTCAACGAAATTGATGACGAACGAATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218118=FH2=PU(10.4=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]