MmuINT0065110 @ mm9
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52967286-52973270:+
Coord C1 exon
chr2:52967286-52967492
Coord A exon
chr2:52967493-52973145
Coord C2 exon
chr2:52973146-52973270
Length
5653 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTATCTCTGACACCTTCAGCTG
3' ss Score
6.86
Exon sequences
Seq C1 exon
CACAAAATGGAACAGCATCGCCACCTATGTCCCCACCTCCTCCCCCACCCCCTCCACCCCCTCCCCCACCCCCTCCACCCCCTCCACTCCCAGGCCCTGCAGCTGAGACTTCACCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTCAACTCAGGATTAGCAG
Seq A exon
GTGAGAACATGGGATGGGAATGGAGATGCTTGTGTGTGAAACCCTCATTCCCCTCCCCCTCCCCCCTCTCCCTCCCTCTCCCTCTCGAGAGCTAAAGCTGCTCTTTCAGCAATTGGAACTTTCTCATCTGTACATGTCCCTTAGAAGGACATTCCTGCTAATGTAGCCAGCAAAGGGGAAATCGTCATACATGAGTAGCATTTGTCACACTCTTCCTAGCGGTTCTGACCTTGTCATCTAGCGTTTCCCCTGTCTTTCCCTACAGTGGCCAAAGCTCTGAACTAGGTCCTCCTATTGAGAGTTGTTCTTTTGTAAGTTAGTGGGAGTGTCTTCTGTGAGGAGAACACGCCTTTGAGTAATGGCCTCTGTGATGCAGAGTTGCAGGCTTGGCTTCTGCACATTTGTCAGGGTTTGCCACAGTAGTTTTAGGCTTCGAGGGGAATAACAGCAATTTTTTTTTTTTTTAATGATTTGAAAAGCTTCCAAATAATTCATCTCCTCCTGCTCATCAGGAGGTAAGGGTGTGCCCTGCCTTGCTGGAAATAAACGGGAGGCAGGGGAGGGAGATGAAGGGAACTGTTCCAAGCCTTGAAATAAGTTACTAGTTTTGAAGCTTGGACATGAAATTTTACTCTTTAATACTGAGCCACTTCAGAGTGTCACTGAGAGTTCGGAGTTGTTCTGAGGTCCTGTCCCTGTTTTGACGGTGGGTAGCACTGTGCTGAGCTTACCACCTGTGCTCTAGGGATCTCTGTTCTGATAGTGAGTAACTGCTTTGAGGTTGGCATTCTTTGCTACTGGGTAGCTTTCTCTGTAATAATGGGTAGCCCTGCTTGGAGGTAGCAGTCTCTTCCATACTAAGTCAGTCCCCTCTGAGGTGGTTGTTAGGTTCCTGCTCAGAGGCTGCCACCACGTGACACCAGGCAGCTCTGCTATTGAGAGGCTTTCCCAGTGATACTGCACCACAGTCTTAGTTTGCTGTTGGTTATTGCTGTGTGATAAACACCATAAGCAAGGCAACTTGGGAAGGAGAGGGTTTACTTTAGCTTACAGATTAGCATGGAGAGAAATTTGGGCAGGGTCTCAAGGCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGACATGTTGCTTACTAGCTTGCTCCCTATTGTTTGCTCAGCCTGCTTTCTTACACCTAGGGGTGACAGGGCTCAAAATGAGCTGGAACGTCTGAAATCAGTCAGTAATCAGTGAATTGCCTTACATCTTGCTTACAAGTCAATCTAATGGAGGCATTTTCTCAATTGATGCTTCTTCTGCCAAGGTGACTCTTAACCTGTGTCTAGTTGACAGTAACAAACAAACTAAAAGAAGGAACCAATTCACTAGCACTGCTCTCAAGTTGCCGCTCTGGACTATTGGGTAGCTCTGCCCTGAGGTGGCGATCTGTTCCTGTGATCCTGGGCAGCTCTGTTCTGAGGTGTCTGTCTATCCCTGTAGGTAGCACTAGGTAGTACTGTTCTTGAACTCTCTCAGTTACTATGAGCAGCTACCCTGCTACCCTCTAGTTTAGCAGTTCTCACCTTGTGGTGGTCAAACAGCTCTTTCACAGGGGCCATATATCAGATATCCTGCACATCAAATATTTACATTATGATTCATAACTAGAAGCTAGAATTGTGACGTAGCAATGAACGAATTTTATGGTTGAGGGGTCATCACAACGGGAGGTGCTTTATTAAAAGGTTGAGGACCCCTGCGCTAGTTCCAAGGCTGTGGTGGTTTCTGTCATATCCAAGCCTAAAGGACAGTCTTTGAAGATTTCTACTTCTCAGTCCCTCCAAGGGTCGCCTCAGCAGCTTTATCTGCACCCCCCCCCCCTTTCTCGGATAATTTCTCCAAGTAACTATAAGCCTTTCAGCCATCCAAAAGTTTCTTAAGCAGATTTGCCCACCTCAGCTTCTACTGTAGCCGTGACATCTGTGAAGTTCTCAAGGATACAAAGATGCCTTTTCAATTTCTTGGTAAATTTGTGGCTTATTTTTACCCTTCAAGATCTCCCATGTTTACCACTTTCTTCTAGAACTTTTGTTGCTTCGGAAGAGGAAGGGTGGAGGAGAGTCACCGTGGAGCTATTGGAGTCTGAATGTAAATAGTGAGCGCCGTACGCTCTCTGGGGATCTGCTCTGTCACCAGGCTGTTCCTGGTGACTCAATGTGGATGCCACCATTGCCTTGCACACCTGGGTCACTGACTAAGCTTTCCTTGTAGCTCCGGACGAGCATTTTCTGTGAGATGTGTCTACTATGCCTCACCTGGAGCGGCTTCTTTTTCCATTGCAAAAGCTAACCTGTGGTTCAGCATCCGCTTGCGTTCACATGAGCTAAAGCAGACCTAAGTCATTGGCAGGGAAGTGGGCTGTAGGCCGAGGCTGCAAGTCCAAAGTGCCTTTCCAAAACATGGCCGTGCAAGGTTTTTTTTTTGGAGGGGGGGGGGTTGTTTGTTTGTTTGTTTGCATTAAGCCTGTGCAGCTACTTCATTTTTAACTTTGTTAAAACTCTAGGGTGTTTTAAGTTTATGGTGCAGAGTTCTGCGCTCAGCTGATTACGGCTGCGCTCAGGAGCCTCACAGGTAGATGTCTCCACTGTTACTCTGAACCATAGATAGGACTGAAGAAGTCCTCTTAGCTCATTAAATGTCTGCCAGTAGTTACAAGATACGTCTTGTTTTATAAGATTACAAAGTCCTAAGTGTTCCATAATTTGGGATTAGGTACTTTCTGCGAGGCCTCTAATCTCCCTCTTATTCATCCTTAATTTGGCTTCCAGTTCAGAGTAAGTGAAGCTGATTTTGTAAAATATTCTCCCTGTGTGTTCAGTGATTTTTCTCTCTGGAATCCAGAGGTCTGAGAGAATCAGGACATCTCAGTAGAAGTAAGAGACACAGCTGTCTGCTATACTCCATGCCTAGCTGAAGTCAGGAAATTTTTCCTTATTTGAGTTGAAAAGATTCTTCCCCCACCATCTCCCTTACTGCAACTCCCCACTACTTGGATGAAGGGTCAATTAGAGAAAGCCTTTGCCTGTCGAGAACATTGGATATCTCTATAGAAGTAAATTCCCATTACTTCTAGAAAACCCCTTAGCCTGTAGGCCCACCGTGACAGGATATCTATCCGATATCTCTGCAGTGGGGAAGAGTGGACACAGCAGGGAGTCAGGAAGAAGTCCCATAGTGTATCTCTAGCTGAAAAAAATTCTTTAGGCTTCATAAAGAAAATGTTAATACTATGATATAGCCACTCACGTCTTCAAGTAATGTATGTAAGATAACAAGGCAAATGGAGCAGTCTGACTCCTTTCCTGAGGTAGGTCAACTGTGGATTAGGCATTTTCTATTTCTGTGACCTGCTGCCCTCAGGATCCTCCGCTGCCTGTGCAGCTGGTGGCCTTTGCTTTGCTTTGAGAAGATATGCTTGAATCCTCTCAGTGTCTGACTTTGGCTGATTCTGTGTTATTAAGAACTTGTTTACAGTCTATGGAATAGCTAGTACAGTTCACTATGGCTGCTCGGGACCATTACAATGAAATATTTTGTTTTGTTTTGTTTTCTCTTTCTCCCAGAGAGGGGTGGGGAATACAGAAACATAAACAAAAACACAAAGTGAATCTTCAGAGGCAGGAGACTGGATTTTTGGCTTTGTGCTGCTGAAATGTGTCCACGAGGCATGGAGTTCTATGCTAAGAGTGCTGTGAACTGCTGGGCCACCCAACTCTAACTGTATCTAATATATATCTATATATTTTGTGTTTTCTGTTCTTTCTGCTTCCACAAAAGATGGGCCAATCAAGCTTTTCTGTAGGTGGCTCCTCACCACGCGTGTTGAGTATTTCCTGTGTGTTCTGTCAGTCACCCTGTGCCTCGACATCTCTCCATTCCACCCTACTTTGAGCCATGGCATTTGACATTGTGTCTCGAGGTAGTCTGGGTGTTGGCTGACTGTGACTCCAGGTTTGCCCATGTGTTTCAGCTGAATCTGTACATCTCCTGAAGGCACGGCCTGGATTCACAGGCCATGTTCCAGTCCTTTGATAGAGGAATGTTTCTTTCTTAGTATTTAGTTTTCATAGTCAGTTCTAATCTTTCCACTCTGACTGTATTCTAAGGAAATAAAGAGAATAAGAGAAAATGGTTGGCTGTACCTTACCAAGACCCTCCCACTGCCTGTGGTTCTATTATGTGGAACAACCACACATTTAAAGTTACTTTCTTTAGCTTGAGTCCTGGGGTCACAGTATATGTCCTCGACACCTATAGGCCCTGCTGTCTGCTATACTGTACGCCTAGCCAAAGTCAGGAAGTTTTTCCTTACTTGAGTTGAAATGATACTTCCCCCACCATCTCCCTTACCGCCATCCCCCACCATTTGGATGAAGGGTCAATTATAGAAAGCCTTTGCCTGTCGAGGTCATTGGTTCTCCTGGGTAGTGTAGACAAAAACGTAAGTGTGAGCAGGAATCTAACACTGTTGATAATGGGGATTAGGGTGCCACGTTTGGTGATAGAAAAGCCTGTTTTGGCGAAAGCTGTCTTTGTGTTGCTGCATGCTTCTGTGTGGATCTATCTGATGACATTCCTTCTCTTTCTATGGCCTTTGTAACTCTGGAGGAATGAGAGGCACTAGCTGTATCCCTTTGCAGTAAACATCTATGAAGGCAGGGCAAAGCTCGGGTGCTGGTCATCTTTGCTGTGTCTATCCCAAAGCTTTAACTTCCTCTCCCCGTACCTGCCGAGTGAGGAAACTCACCTTATGGTGAGGGGGAAACTCACAGTAGGCAGGTGGGGGGAGTGTATATAGCGAAGTGGTTTGGAAAGCCTTGTGTATGATGTATAATAATATAACGAATGTTAAACAGTTATCTTTTAGGTTTGTTTTCTCAAAATGAGAGGTGCTAATTCCCTTTAGCCCATAAATATTAGATCCAAGCCTCTCACTTTCGGTACATTTAATAAGTTCACTGATGATGTCTAGATAACTGGCTCCTTTAGAAGGGGGAGAAGGGACTGTAGCACTCCTGAGGGTCACTGTGATCTCTGCGCTGGCCCTCTGTCATCTTCATTGTTCTCTGATACCGGCCACTGATGCTCCTTGTCTATTTGAAATGCCTCAGCAGCCAGTGTAGTCTCTTTATCACAGTCGCCCACAGCAATGCAGCTTCCTGCCGAAGAGCATCATTCTTGCTGTGATATTCCTAGTGGGTTAGGCAGTCCTTCCTCCCCGCAGTCTCAGACCACCCTTTAAAGCTTATTTATAAATATATATCCTAGGAACAAGAGTAGAAGACCTCAGAATTCAAGGCAGTTTCCCCCTCTGCTGTCTAGTCTCATACTGTAACTTACAAAGCAATAGTCTAATGGCCTCAGTAAAACCAAATAAACTCAATCCTCAGCCCCTAGGCAGCTTTTATAATACTCCAGTATTAGGCACCCAAATGGGGACCTTGAATGGCTCTGGCCAAGTCCAGGTGCTCTCAATGTTTGGCACCACCTGGGTGCCTCTTGCCAACTTCCTCCAGCGTTCAAGTGTCATCTGCAAGGACTGTTGTCTTAATGTTCCCAAAGATTCCAAGGTTTTAGACAGGACTTAATTTTCTTATCTCTGACACCTTCAG
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAGTTCCGAATGCCAGTGTTTAACTGGGTCGCCCTGAAGCCCAATCAGATCAACGGCACAGTCTTCAATGAAATCGATGATGAGCGGATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-Fmnl2:NM_172409:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218118=FH2=PU(10.4=90.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: