HsaEX0026036 @ hg19
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:18267]
Coordinates
chr2:153476023-153482076:+
Coord C1 exon
chr2:153476023-153476232
Coord A exon
chr2:153479051-153479071
Coord C2 exon
chr2:153481952-153482076
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGCTTCCACAAAAGATG
3' ss Score
3.69
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
TGCAAAATGGTCCAGTAACACCACCTATGCCACCGCCGCCGCCGCCCCCTCCTCCACCTCCTCCTCCCCCACCGCCCCCTCCGCCTCCTCCTCTCCCAGGCCCTGCAGCTGAGACTGTACCAGCTCCTCCCTTAGCACCTCCCCTTCCCTCTGCACCTCCGCTGCCTGGAACATCTTCACCCACAGTGGTTTTCAACTCAGGATTAGCAG
Seq A exon
ATGGGCCAATCAAGCTTTTCT
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAGTTCAGAATGCCAGTGTTTAACTGGGTTGCTCTGAAGCCCAATCAGATCAATGGCACAGTCTTCAATGAAATTGATGATGAGCGAATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827-'22-28,'22-26,24-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=0.000 C2=0.084
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(10.4=90.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGGAACATCTTCACCC
R:
TCAGAGCAACCCAGTTAAACACT
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)