BtaEX0014941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98487920-98503035:+
Coord C1 exon
chr11:98487920-98487946
Coord A exon
chr11:98500132-98500196
Coord C2 exon
chr11:98502921-98503035
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACAAGACCTTTTCTTTACAGGGC
3' ss Score
7.64
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
GCGTCTGGGAGCCACACCTGCTTCCAG
Seq A exon
GGCTCCACGTGTGCCTTCACTGAACGTATCCTCCGAAGCTATGGCCTGAAGACGGGGTTCTTTAG
Seq C2 exon
CTCTCCCCACCTGGTGCAGGTGCGTGAGCGGATCCGCATCAATGGGCAGCCCATAAGCTCCGAGCTCTTCACCAAGCACTTCTGGCGCCTCTACCACCGGCTGGAGGAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF082457=Mur_ligase_M=FE(10.1=100)
C2:
PF082457=Mur_ligase_M=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCCACACCTGCTT
R:
TTGGTCTCCTCCAGCCGG
Band lengths:
136-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development