DreEX0033399 @ danRer10
Exon Skipping
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6014312-6015051:+
Coord C1 exon
chr21:6014312-6014365
Coord A exon
chr21:6014451-6014515
Coord C2 exon
chr21:6014937-6015051
Length
65 bp
Sequences
Splice sites
3' ss Seq
AGTATTTTTATTCATTACAGGGA
3' ss Score
6.16
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTAGAAGAACTGGATCGTCTTAATATTATTCATGTAACTGGAACAAAAGGAAAG
Seq A exon
GGATCAACATGTGCCTTCACAGAAAAGATTTTGAGAAACTATGGCTTCCGCACTGGATTCTACAG
Seq C2 exon
TTCTCCTCATTTGGTGCAAGTGAGAGAGCGGATCCGAATCAACGGTCAGCCAATAGGAAAAGAGCTTTTCACCAAATACTTCTGGCAAGTGTATGGACGACTGGAGGAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=PU(2.8=33.3)
A:
PF082457=Mur_ligase_M=FE(9.9=100)
C2:
PF082457=Mur_ligase_M=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCATGTAACTGGAACAAAAGGA
R:
TTTGTCTCCTCCAGTCGTCCA
Band lengths:
143-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]