MmuEX6100595 @ mm10
Exon Skipping
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32687920-32692504:-
Coord C1 exon
chr2:32692451-32692504
Coord A exon
chr2:32691190-32691254
Coord C2 exon
chr2:32687920-32688034
Length
65 bp
Sequences
Splice sites
3' ss Seq
TCCTACCCAATGCTTTCCAGGGC
3' ss Score
6.99
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
GTGGAGGACTTGAACCGGCTAAACATTATTCATGTCACTGGGACCAAAGGGAAG
Seq A exon
GGCTCCACCTGTGCCTTCACCGAACGGATCCTGCGGAATTACGGCCTGAAGACCGGCTTCTTTAG
Seq C2 exon
CTCTCCTCACATGGTGCAGGTGCGGGAGCGGATTCGAATCAACGGGAAACCAATCAGCCCCGAGCTCTTCACCAAGCACTTCTGGTGCCTCTATAACCAGCTGGAGGAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-'11-18,'11-14,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=PU(10.9=33.3)
A:
PF082457=Mur_ligase_M=FE(14.3=100)
C2:
PF082457=Mur_ligase_M=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACTTGAACCGGCTAA
R:
CTTGAACTCCTCCAGCTGGTT
Band lengths:
168-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types