HsaEX6063133 @ hg19
Exon Skipping
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130566778-130569366:+
Coord C1 exon
chr9:130566778-130566831
Coord A exon
chr9:130566915-130566979
Coord C2 exon
chr9:130569252-130569366
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACAATCCCTTTTCTTTCAAGGGC
3' ss Score
8.45
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
GTGGAGGACTTGGACCGGCTGAACATCATCCACGTCACTGGGACGAAGGGGAAG
Seq A exon
GGCTCCACCTGTGCCTTCACGGAATGTATCCTCCGAAGCTATGGCCTGAAGACGGGATTCTTTAG
Seq C2 exon
CTCTCCCCACCTGGTGCAGGTTCGGGAGCGGATCCGCATCAATGGGCAGCCCATCAGTCCTGAGCTCTTCACCAAGTACTTCTGGCGCCTCTACCACCGGCTGGAGGAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-'7-16,'7-14,8-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=PU(3.4=33.3)
A:
PF082457=Mur_ligase_M=FE(11.7=100)
C2:
PF082457=Mur_ligase_M=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACTTGGACCGGCT
R:
CTTGGTCTCCTCCAGCCGG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)