HsaEX6063133 @ hg38
Exon Skipping
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr9:127804499-127805925:+
Coord C1 exon
chr9:127804499-127804552
Coord A exon
chr9:127804636-127804700
Coord C2 exon
chr9:127805825-127805925
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACAATCCCTTTTCTTTCAAGGGC
3' ss Score
8.45
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
GTGGAGGACTTGGACCGGCTGAACATCATCCACGTCACTGGGACGAAGGGGAAG
Seq A exon
GGCTCCACCTGTGCCTTCACGGAATGTATCCTCCGAAGCTATGGCCTGAAGACGGGATTCTTTAG
Seq C2 exon
CGCCCCCTCTTGGTCTCACTTGTCTAGACTTACACAAGAGGATGGCCAGGTGGAACCGGGATCACTCTTCCTGTGCCACGCATGTCTTCTAAGCCCATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-'6-19,'6-18,7-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=PU(2.8=33.3)
A:
PF082457=Mur_ligase_M=FE(11.7=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTTGGACCGGCTGAA
R:
TGATGGGCTTAGAAGACATGCG
Band lengths:
151-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains