BtaEX0015292 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005562 | GALNT13
Description
Bos taurus UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) (GALNT13), mRNA. [Source:RefSeq mRNA;Acc:NM_001076886]
Coordinates
chr2:41990200-42032617:-
Coord C1 exon
chr2:42032447-42032617
Coord A exon
chr2:42015065-42015182
Coord C2 exon
chr2:41990200-41990380
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTTTCAACTAGGAC
3' ss Score
10.62
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAAGACAGTTGTATGCCCCATCATTGATGTGATTAGTGATGACACCTTTGAATACATGGCTGGGTCAGACATGACTTATGGGGGTTTTAACTGGAAACTGAATTTCCGTTGGTATCCTGTTCCCCAGAGAGAAATGGATAGAAGGAAAGGAGACAGAACTTTACCTGTCAG
Seq A exon
GACCCCAACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGG
Seq C2 exon
ATTTGGCAGTGTGGAGGCTCATTGGAGATTGTGACTTGTTCCCACGTTGGTCACGTTTTTCGGAAGGCAACTCCCTACACATTCCCTGGTGGCACTGGTCATGTCATCAACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGGATGAATTTAAAGATTTCTTCTATATCATATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005562_MULTIEX2-10/10=9-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGTTGTATGCCCCATCA
R:
TGTAGGGAGTTGCCTTCCGAA
Band lengths:
248-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development