MmuEX0020013 @ mm9
Exon Skipping
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:54710206-54785980:+
Coord C1 exon
chr2:54710206-54710376
Coord A exon
chr2:54732466-54732583
Coord C2 exon
chr2:54785800-54785980
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTCAACTAGGAC
3' ss Score
10.3
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAAAACAGTTGTGTGCCCGATCATTGATGTTATTAGTGATGATACGTTTGAGTACATGGCTGGGTCAGACATGACTTATGGTGGTTTCAACTGGAAGCTAAATTTCCGATGGTATCCTGTCCCTCAAAGAGAAATGGATAGGAGAAAAGGAGACAGGACATTACCTGTCAG
Seq A exon
GACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGG
Seq C2 exon
ATCTGGCAATGTGGAGGTTCTTTGGAGATTGTGACTTGCTCTCATGTCGGTCATGTTTTTCGAAAGGCAACTCCATACACATTCCCTGGTGGCACTGGCCATGTCATTAACAAGAACAACAGAAGACTGGCAGAAGTGTGGATGGATGAATTCAAAGATTTCTTCTATATCATATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGCCCGATCATTGATGT
R:
GCCACCAGGGAATGTGTATGG
Band lengths:
255-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: