DreEX6034929 @ danRer10
Exon Skipping
Gene
ENSDARG00000099227 | galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
Coordinates
chr9:4605415-4610453:-
Coord C1 exon
chr9:4610283-4610453
Coord A exon
chr9:4606503-4606620
Coord C2 exon
chr9:4605415-4605595
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTTTGATTTCTTTTCTCAGAAC
3' ss Score
9.13
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GAGGGCTGTGGTCTGCCCGATTATTGATGTCATCAGTGATGAGACATTTGAGTACATGGCCGGCTCAGATATGACCTATGGGGGATTCAACTGGAAACTCAACTTTAGATGGTATCCAGTTCCTCAGAGAGAGATGGACCGCCGTAAAGGGGACCGGACCCTTCCTGTAAG
Seq A exon
AACTCCCACGATGGCAGGAGGTCTGTTCTCTATTGACCGAACGTATTTTGAAGAGATTGGCACCTATGACTCAGGGATGGATATATGGGGAGGCGAAAATCTTGAGATGTCTTTCAGG
Seq C2 exon
ATCTGGCAATGTGGAGGATCTCTAGAGATAGTGACATGTTCTCACGTCGGACATGTGTTCCGGAAAGCCACACCTTACAGCTTTCCGGGCGGGACTGGTCAGGTGATAAACAAGAACAACAGACGATTGGCTGAAGTCTGGATGGACGAGTTTAAAGATTTCTTCTACATCATCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099227-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGTCTGCCCGATTATT
R:
CTGTAAGGTGTGGCTTTCCGG
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]