MmuEX6000591 @ mm10
Exon Skipping
Gene
ENSMUSG00000000420 | Galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693]
Coordinates
chr18:24267528-24271766:+
Coord C1 exon
chr18:24267528-24267698
Coord A exon
chr18:24269448-24269565
Coord C2 exon
chr18:24271586-24271766
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTTTTATGATTGAATTTCAGAAC
3' ss Score
6.95
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAGGACAGTGGTGTGTCCTATCATCGACGTGATCAGTGATGACACTTTCGAGTACATGGCGGGCTCTGACATGACCTATGGTGGCTTCAACTGGAAGCTCAATTTTCGTTGGTATCCTGTTCCCCAGCGAGAAATGGACAGAAGGAAAGGTGACAGGACTCTTCCTGTCAG
Seq A exon
AACACCTACAATGGCTGGAGGCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATACGATGCTGGAATGGATATTTGGGGAGGAGAAAACCTAGAAATTTCATTTAGG
Seq C2 exon
ATTTGGCAGTGTGGAGGAACTTTGGAAATAGTGACATGCTCCCATGTTGGTCATGTGTTTCGGAAAGCTACACCTTACACATTTCCAGGAGGGACAGGGCAGATTATCAATAAGAATAACAGGCGGCTTGCAGAAGTATGGATGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000420-'22-27,'22-25,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCTCTGACATGACCTATG
R:
ATCCATACTTCTGCAAGCCGC
Band lengths:
255-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types