RnoEX6058263 @ rn6
Exon Skipping
Gene
ENSRNOG00000016207 | Galnt1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RGD Symbol;Acc:620358]
Coordinates
chr18:16167963-16172516:+
Coord C1 exon
chr18:16167963-16168133
Coord A exon
chr18:16169821-16169938
Coord C2 exon
chr18:16172336-16172516
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTATTATGATTGAATTTCAGAAC
3' ss Score
6.69
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAGGACAGTGGTGTGTCCTATCATCGATGTGATCAGTGATGACACTTTTGAGTACATGGCGGGCTCTGATATGACCTATGGTGGATTCAACTGGAAGCTCAATTTCCGTTGGTATCCTGTTCCCCAACGAGAAATGGACAGAAGGAAAGGTGACCGGACTCTTCCTGTCAG
Seq A exon
AACACCTACAATGGCTGGAGGCCTGTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAACCTAGAAATTTCCTTTAGG
Seq C2 exon
ATTTGGCAGTGTGGAGGGACTCTGGAAATAGTGACGTGCTCCCACGTTGGCCATGTGTTTCGGAAAGCTACGCCGTACACGTTCCCGGGTGGCACGGGGCAGATCATCAACAAGAATAACAGACGGCTCGCGGAGGTGTGGATGGATGAATTCAAGAATTTCTTCTACATAATTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016207-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGAGTACATGGCGGGCTC
R:
CGCGAGCCGTCTGTTATTCTT
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]