GgaEX6020766 @ galGal3
Exon Skipping
Gene
ENSGALG00000013135 | Q5ZJL1_CHICK
Description
NA
Coordinates
chr2:86094972-86099052:-
Coord C1 exon
chr2:86098882-86099052
Coord A exon
chr2:86096077-86096194
Coord C2 exon
chr2:86094972-86095152
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTCTTTTTTCAGGAC
3' ss Score
13.66
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GAGAACAGTCGTGTGTCCCATCATTGATGTTATTAGTGATGACACCTTTGAATACATGGCAGGTTCTGATATGACCTATGGTGGTTTCAACTGGAAGTTGAATTTTCGTTGGTATCCGGTTCCTCAGAGAGAGATGGATCGACGGAAAGGAGATCGAACTCTTCCTGTTAG
Seq A exon
GACGCCTACAATGGCAGGAGGTCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACGTATGATGCTGGAATGGATATTTGGGGTGGAGAAAACTTAGAAATTTCTTTCAGG
Seq C2 exon
ATTTGGCAGTGTGGTGGCACTTTGGAAATTGTAACTTGTTCACATGTCGGGCATGTGTTCAGAAAAGCAACACCATATACTTTTCCAGGAGGTACAGGGCAGATAATCAACAAAAATAACAGACGGCTTGCAGAAGTCTGGATGGATGAATTCAAAAACTTTTTTTATATCATTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'13-14,'13-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGGTTCTGATATGACCT
R:
GACTTCTGCAAGCCGTCTGTT
Band lengths:
253-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]