GgaEX6020766 @ galGal4
Exon Skipping
Gene
ENSGALG00000013135 | GALNT1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RefSeq peptide;Acc:NP_001006381]
Coordinates
chr2:83831175-83835255:-
Coord C1 exon
chr2:83835085-83835255
Coord A exon
chr2:83832280-83832397
Coord C2 exon
chr2:83831175-83831355
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTCTTTTTTCAGGAC
3' ss Score
13.66
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GAGAACAGTCGTGTGTCCCATCATTGATGTTATTAGTGATGACACCTTTGAATACATGGCAGGTTCTGATATGACCTATGGTGGTTTCAACTGGAAGTTGAATTTTCGTTGGTATCCGGTTCCTCAGAGAGAGATGGATCGACGGAAAGGAGATCGAACTCTTCCTGTTAG
Seq A exon
GACGCCTACAATGGCAGGAGGTCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACGTATGATGCTGGAATGGATATTTGGGGTGGAGAAAACTTAGAAATTTCTTTCAGG
Seq C2 exon
ATTTGGCAGTGTGGTGGCACTTTGGAAATTGTAACTTGTTCACATGTCGGGCATGTGTTCAGAAAAGCAACACCATATACTTTTCCAGGAGGTACAGGGCAGATAATCAACAAAAATAACAGACGGCTTGCAGAAGTCTGGATGGATGAATTCAAAAACTTTTTTTATATCATTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'24-25,'24-21,29-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.7=45.0),PF027099=Glyco_transf_7C=FE(52.0=100)
C2:
PF027099=Glyco_transf_7C=PD(29.3=36.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGGTTCTGATATGACCT
R:
GACTTCTGCAAGCCGTCTGTT
Band lengths:
253-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]