DreEX6041126 @ danRer10
Exon Skipping
Gene
ENSDARG00000061335 | galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2360]
Coordinates
chr16:27191293-27199155:+
Coord C1 exon
chr16:27191293-27191463
Coord A exon
chr16:27196055-27196172
Coord C2 exon
chr16:27198975-27199155
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTTTTTCCACTAGGAC
3' ss Score
11.6
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GAAAACCGTAGTGTGTCCCATCATTGACGTGATCAGCGATGACACGTTTGAGTACATGGCAGGCTCTGATATGACATATGGTGGGTTCAACTGGAAGCTGAACTTCCGCTGGTATCCTGTCCCACAGAGAGAGATGGACCGCAGGAAAGGAGACCGAACGCTGCCTGTCAG
Seq A exon
GACCCCGACAATGGCAGGTGGCCTCTTCTCCATAGACAGAGATTATTTCCAGGAGATCGGCACATATGATGCAGGAATGGACATCTGGGGAGGAGAAAACCTGGAGATCTCATTTAGG
Seq C2 exon
ATTTGGCAGTGTGGCGGGACGCTTGAGATTGTCACATGTTCTCACGTCGGTCACGTGTTTCGTAAAGCAACGCCTTACACGTTCCCTGGTGGAACTGGGCAAATCATCAACAAGAACAACAGACGGCTGGCAGAGGTCTGGATGGACGAGTTCAAGAACTTCTTCTACATCATCTCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061335-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTGAGTACATGGCAGGCT
R:
CCAGCCGTCTGTTGTTCTTGT
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]