GgaEX0018939 @ galGal4
Exon Skipping
Gene
ENSGALG00000012536 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr7:35191075-35203457:+
Coord C1 exon
chr7:35191075-35191245
Coord A exon
chr7:35197390-35197507
Coord C2 exon
chr7:35203277-35203457
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTTTTCAACTAGGAC
3' ss Score
9.81
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAGAACTGTTGTGTGCCCAATCATCGACGTGATCAGTGATGACACGTTTGAGTACATGGCTGGGTCAGATATGACTTACGGAGGGTTCAACTGGAAGCTGAACTTCCGCTGGTACCCTGTGCCCCAGAGGGAGATGGACAGGAGGAAGGGGGACAGGACCTTGCCTGTAAG
Seq A exon
GACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGATCTTACGATGCAGGAATGGATATCTGGGGTGGCGAGAATCTTGAAATGTCTTTTAGG
Seq C2 exon
GTTTGGCAGTGTGGTGGCTCCCTTGAGATTGTCACATGCTCACACGTTGGCCATGTCTTCCGTAAAGCAACCCCTTACACCTTCCCTGGTGGCACGGGACATGTCATCAACAAGAACAACAGGAGGCTGGCAGAGGTCTGGATGGATGAGTTTAAAGACTTCTTCTATATAATATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012536_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCAATCATCGACGTGAT
R:
CCAGGGAAGGTGTAAGGGGTT
Band lengths:
248-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]