RnoEX0037594 @ rn6
Exon Skipping
Gene
ENSRNOG00000005335 | Galnt13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:RGD Symbol;Acc:735044]
Coordinates
chr3:40334154-40399933:+
Coord C1 exon
chr3:40334154-40334324
Coord A exon
chr3:40356201-40356318
Coord C2 exon
chr3:40399753-40399933
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTCAACTAGGAC
3' ss Score
10.3
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAAAACAGTTGTGTGCCCAATCATTGATGTTATTAGCGATGATACCTTTGAGTACATGGCTGGTTCAGACATGACTTATGGTGGTTTTAACTGGAAGCTAAATTTCCGATGGTATCCTGTCCCTCAAAGAGAAATGGATAGGAGAAAAGGAGACAGGACCTTACCTGTCAG
Seq A exon
GACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGG
Seq C2 exon
ATCTGGCAATGTGGAGGCTCTTTGGAGATTGTGACTTGCTCTCATGTCGGTCATGTTTTTCGAAAGGCAACTCCATACACCTTTCCTGGTGGCACTGGCCATGTCATTAACAAGAACAACAGAAGACTAGCAGAAGTTTGGATGGATGAATTCAAAGATTTCTTCTATATCATATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005335-'6-14,'6-12,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=FE(30.8=100)
A:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTGTGTGCCCAATCATTG
R:
AGGTGTATGGAGTTGCCTTTCG
Band lengths:
249-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]