BtaEX0015571 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016723 | GFI1
Description
growth factor independent 1 transcription repressor [Source:HGNC Symbol;Acc:HGNC:4237]
Coordinates
chr3:51106691-51108619:+
Coord C1 exon
chr3:51106691-51107172
Coord A exon
chr3:51107295-51107432
Coord C2 exon
chr3:51108454-51108619
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCGGCCCCACCCGCCTCAGGTG
3' ss Score
6.44
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCTCGGAGAAGTCGGTGTGCCCGTCGCTGGACGAAGCTCAGCCCTTCCCCCTGCCCTTCAAGCCGTACTCGTGGAGCGGCCTGGCGGGTTCGGATCTGCGGCACCTGGTGCAGAGCTACCGGCCGTGCGCGGCCCTGGAGCGCGGCGCCGGCCTAGGCCTCTTCTGCGAGCGCGCCCCGGAGCCAGGCCATCCCGCGGCGCTGTACGGCCCGGAGCGAGCTGCGGGCGGCGCGGGGGCCGGGGCGCCCGGGGGAGGCAGCGCAGGAGGCGGAACTGCCGGCGGCGCGGGCCTGGGGCTCTTCGGCGACTTCGGGCCCGCGGCGGCAGGACTGTACGAGCGGCCGGCCACCGGCGGACTGTACCCGGAGCGCGGCCACGGGCTGCACGGCGACAAAGGCACAGGCGTCAAGGTGGAGTCGGAGCTGCTGTGCACCCGCCTGCTGCTGGGCGGCGGCTCCTACAAGTGCATCAAGTGCAGCAAG
Seq A exon
GTGTTCTCCACACCGCACGGGCTCGAGGTGCACGTGCGCAGGTCCCACAGCGGCACAAGACCCTTTGCGTGCGAGATTTGCGGCAAGACCTTCGGGCACGCGGTGAGCCTGGAGCAGCACAAAGCCGTGCACTCGCAG
Seq C2 exon
GAACGGAGCTTTGACTGTAAGATCTGTGGCAAGAGCTTCAAGAGGTCATCTACGCTGTCCACACATCTGCTCATCCACTCAGACACCCGGCCCTACCCCTGTCAGTACTGCGGCAAGAGGTTCCATCAGAAGTCAGACATGAAGAAACACACCTTCATCCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016723_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.109 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=58.7)
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCGGCGACTTCGG
R:
GCAGATGTGTGGACAGCGTAG
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development