RnoEX0038231 @ rn6
Exon Skipping
Gene
ENSRNOG00000002042 | Gfi1
Description
growth factor independent 1 transcriptional repressor [Source:RGD Symbol;Acc:2680]
Coordinates
chr14:3063010-3064783:+
Coord C1 exon
chr14:3063010-3063497
Coord A exon
chr14:3063619-3063756
Coord C2 exon
chr14:3064618-3064783
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCCACTCGCCCTCAGGTG
3' ss Score
10.15
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CGTCGGAGAAGTCGCTGTGTCGCTCTCTGGACGAAGCCCAGCCCTACACGCTGCCTTTCAAGCCCTACGCGTGGAGCGGCCTCGCGGGGTCTGACCTGCGGCACCTGGTGCAGAGCTACCGGCAGTGCAGCGCGCTGGAGCGCAGCGCTGGCCTGAGCCTCTTCTGCGAGCGCGGCGCGGAGTCCGGCCGCCCGGCCGCGCGCTACGGCTCGGAGCAGGCTGCGGGCGGAGCGGGTGCGGGACAGCCTGGGAGCTGCGGAGCAGCCAGCGGCGCCACCAGCGCTGGGGGCCTGGGGCTCTATGGCGACTTCGCGCCTGCGGCGGCCGGGCTGTTCGAGCGGCCGAGCACAGCCGCAGGCCGGCTGTACCAAGATCGCGGCCACGAGCTGCACGCGGACAAGAGTGTGGGAGTCAAGGTGGAGTCCGAGCTGCTGTGCACCCGCCTGCTGCTGGGCGGCGGCTCCTACAAATGCATCAAGTGCAGCAAG
Seq A exon
GTGTTTTCCACACCGCATGGGCTGGAGGTGCACGTGCGCCGGTCCCACAGCGGCACGAGACCCTTTGCGTGCGAGATGTGCGGCAAGACTTTCGGGCACGCGGTGAGCCTGGAGCAACACAAGGCCGTACACTCGCAG
Seq C2 exon
GAACGCAGCTTTGACTGTAAGATCTGTGGCAAGAGCTTCAAGAGGTCATCCACACTGTCCACACATCTACTCATTCACTCGGATACCCGGCCCTACCCCTGTCAGTACTGTGGCAAGAGGTTCCACCAGAAGTCAGACATGAAGAAACACACTTTCATCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002042-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.065 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=58.7)
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCTCTATGGCGACTTC
R:
ACCTCTTGAAGCTCTTGCCAC
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]