GgaEX6044247 @ galGal4
Exon Skipping
Gene
ENSGALG00000005940 | GFI1
Description
growth factor independent 1 transcription repressor [Source:HGNC Symbol;Acc:HGNC:4237]
Coordinates
chr8:13085644-13087925:+
Coord C1 exon
chr8:13085644-13086056
Coord A exon
chr8:13086147-13086284
Coord C2 exon
chr8:13087760-13087925
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTCTCTCCCTTTCAGGTC
3' ss Score
14.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCTCAGAGCGATCTGTGTGTCCATCCCTGGATGAAGCACCTCCCTTCTCGGTGCCCTTCAAACCATACACATGGAGCAGCCTGGGAGGCTCTGAGCTGAGGCACCTCGTGCAAAGCTACCGGCCCTGCCCAACACTGGAGCGAACTTCAGCCTTGAGGCTCTTCTGCGAGCGGGGCTCCGAGCCCACCCTCTATGGTGCAGAGTGTAGCTCTTCCCTTGGACTTTATGGTGATTTTGGCTCCCCAGGCCCAGGGCTGTTTGAGCGGCCTCCAGCAGCACCCGGACTCTATACTGAGACACAGACTGGGCTGCAGCAGGAGAAGGGACCTGGTGGCCTCAAAGTGGAGTCCGACCTCTTGTGCCGCCCTTTGCTCATTAGTGCTGGCTCTTACAAGTGTGTCAAGTGCAGCAAG
Seq A exon
GTCTTCTCCACACCACATGGCCTCGAGGTACATGTGCGCCGTTCACACAGTGGCACAAGGCCTTTTGCCTGTGACATGTGTGGCAAGACCTTCGGCCACGCAGTCAGCCTGGAGCAGCACAAGGCCGTGCACTCACAG
Seq C2 exon
GAACGCAGCTTTGATTGTAAGATCTGTGGAAAGAGTTTTAAGAGATCTTCTACTCTGTCCACCCACCTGCTTATCCACTCGGACACCCGGCCCTATCCCTGCCAGTACTGTGGGAAGAGGTTCCACCAGAAATCTGATATGAAGAAACACACCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005940-'3-6,'3-3,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.043 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=58.7)
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCACCCGGACTCTATA
R:
CCCACAGTACTGGCAGGGATA
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]