GgaEX6044247 @ galGal3
Exon Skipping
Gene
ENSGALG00000005940 | GFI1
Description
NA
Coordinates
chr8:14837747-14840028:+
Coord C1 exon
chr8:14837747-14838159
Coord A exon
chr8:14838250-14838387
Coord C2 exon
chr8:14839863-14840028
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTCTCTCCCTTTCAGGTC
3' ss Score
14.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCTCAGAGCGATCTGTGTGTCCATCCCTGGATGAAGCACCTCCCTTCTCGGTGCCCTTCAAACCATACACATGGAGCAGCCTGGGAGGCTCTGAGCTGAGGCACCTCGTGCAAAGCTACCGGCCCTGCCCAACACTGGAGCGAACTTCAGCCTTGAGGCTCTTCTGCGAGCGGGGCTCCGAGCCCACCCTCTATGGTGCAGAGTGTAGCTCTTCCCTTGGACTTTATGGTGATTTTGGCTCCCCAGGCCCAGGGCTGTTTGAGCGGCCTCCAGCAGCACCCGGACTCTATACTGAGACACAGACTGGGCTGCAGCAGGAGAAGGGACCTGGTGGCCTCAAAGTGGAGTCCGACCTCTTGTGCCGCCCTTTGCTCATTAGTGCTGGCTCTTACAAGTGTGTCAAGTGCAGCAAG
Seq A exon
GTCTTCTCCACACCACATGGCCTCGAGGTACATGTGCGCCGTTCACACAGTGGCACAAGGCCTTTTGCCTGTGACATGTGTGGCAAGACCTTCGGCCACGCAGTCAGCCTGGAGCAGCACAAGGCCGTGCACTCACAG
Seq C2 exon
GAACGCAGCTTTGATTGTAAGATCTGTGGAAAGAGTTTTAAGAGATCTTCTACTCTGTCCACCCACCTGCTTATCCACTCGGACACCCGGCCCTATCCCTGCCAGTACTGTGGGAAGAGGTTCCACCAGAAATCTGATATGAAGAAACACACCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005940-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.043 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=58.7)
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF102764=zf-CHCC=WD(100=39.3),PF134651=zf-H2C2_2=PU(38.5=17.9),PF0013017=C1_1=PU(11.8=10.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCACCCGGACTCTATA
R:
CCCACAGTACTGGCAGGGATA
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]