DreEX6022138 @ danRer10
Exon Skipping
Gene
ENSDARG00000044457 | gfi1ab
Description
growth factor independent 1A transcription repressor b [Source:ZFIN;Acc:ZDB-GENE-040116-8]
Coordinates
chr6:29014472-29015381:-
Coord C1 exon
chr6:29014987-29015381
Coord A exon
chr6:29014751-29014888
Coord C2 exon
chr6:29014472-29014637
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTCTTTACTCCACAGGTG
3' ss Score
12.23
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
AGTCGGAAAAGTCTTTTTCACCCTCCGTGGAAGAAACACAGCCCTTCGCTGTACCCTTCAGGCCTTACGCTTGGAGCAGGTACTCGGGGTGTGAAATCAGGCAGCTGGTCCAACATACCCTCAACCATCACCGCTCTCTGGATCTCGAGCGGCCTACTCCAACCTATTACAATGAGCGCGTGACCGAGCCCTCTATTTTCACCGAACGAGGATCTGGCGCAAGAATTTACAACAGCTATGGCTCCACTGCCTCTTTGTTCGAGCGCGCCACTGCTTCTGGACTCTTTGATGATAGCAGCATGTTGGGAAAAGGAACTGAGATGAAGTCCAGCTCTGATGTGATCTGCAGTCGTCTCCTGTTAAATGGCGCATACAAATGTATAAAATGCAGCAAG
Seq A exon
GTGTTTTCTACACCCCATGGCTTGGAAGTTCACGTCCGGAGGTCGCATAGTGGAACAAGACCGTTCGCTTGCGACATTTGCGGGAAAACGTTCGGACACGCGGTCAGCCTGGAGCAACACAGAGCTGTTCACTCACAG
Seq C2 exon
GAGAGAAGTTTTGATTGTAAAATCTGCGGGAAAAGCTTTAAAAGGTCTTCCACCCTGTCCACTCATCTCCTTATACACTCCGACACACGGCCCTACCCGTGCCAATACTGCGGGAAGAGGTTTCACCAGAAATCAGATATGAAGAAACACACATTTATCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044457-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.043 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=58.7)
C2:
PF0009621=zf-C2H2=WD(100=41.1),PF102764=zf-CHCC=WD(100=39.3),PF134651=zf-H2C2_2=PU(38.5=17.9),PF0013017=C1_1=PU(11.8=10.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGATCTGGCGCAAGAATT
R:
TGGACAGGGTGGAAGACCTTT
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]