BtaEX0016165 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22373212-22377391:+
Coord C1 exon
chr2:22373212-22373329
Coord A exon
chr2:22377117-22377201
Coord C2 exon
chr2:22377301-22377391
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTCTATTTCTTATTCTTAGGCC
3' ss Score
9.18
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCTATCGTCTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTCTGGTGTTTGTCTTATTGTACAGCTCCCTCTATAGCACCTACCTGTGGACAG
Seq A exon
GCCTTCTAGCAATTTCTTTATTTCTTTTGAAAAAGAGAGAAAGGGTACAAATTCCTGTTGGAATCATCATAATATCTGGCTGGGG
Seq C2 exon
GATTCCTGCTCTCCTTGTTGGTGTTCTTTTGGTAACTGGAAAACATAATGGAGAAAGCATTGACTCAGCCTTCTTTTATGGAAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF152421=FAM53=PU(7.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGTGCTGGAATGATGAT
R:
GGCTGAGTCAATGCTTTCTCCA
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development