GgaEX1027232 @ galGal3
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18089108-18090450:+
Coord C1 exon
chr7:18089108-18089228
Coord A exon
chr7:18090194-18090278
Coord C2 exon
chr7:18090360-18090450
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTGTTCTTTGTAGGTT
3' ss Score
11.73
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTTGTTGCTTGCATTGGAATGGTGATATGGAATTTCACTGTTAAACAAAAAGATGTAACTGTGCAGATCCTAGTATTTATATTTCTCTACAGTTCACTTTATAGCACCTACCTGTGGACAG
Seq A exon
GTTTTTTATCCTTCTCTTTGTTTCTGTTGAGGAAGAGAGAAACACTGAAGATTCCCATTGGATTTATAATCATAGCTGGATGGGG
Seq C2 exon
AGTCCCAACGCTTCTGGTGGGAATCTTGTTAATAGTTGGTGAACGTAACAGCACTACCATTGACTCTGCCTTTTTCTATGGAAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'11-11,'11-10,13-11=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCTTGCATTGGAATGGTG
R:
GGTAGTGCTGTTACGTTCACCA
Band lengths:
177-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]